Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0238
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 122 4e-28
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 37 0.014
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 37 0.019
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 34 0.13
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 30 1.7
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 29 3.8
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 3.8
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 3.8
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_42653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17) 28 8.8
SB_45162| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 122 bits (293), Expect = 4e-28
Identities = 57/91 (62%), Positives = 59/91 (64%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 434
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 58 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQR 117
Query: 435 XXXXXXXXXXXXXXXXXQARGHIIERFPIFP 527
ARGH IE+ P
Sbjct: 118 RFAVCSALAASALPALIMARGHRIEKIAEVP 148
Score = 87.0 bits (206), Expect = 1e-17
Identities = 37/71 (52%), Positives = 53/71 (74%)
Frame = +2
Query: 509 KIPDLPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 688
KI ++PLV++D ++ + KT AV L+ + A+ D+ K S+++RAGKGKMRNRR + RK
Sbjct: 143 KIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRK 202
Query: 689 GPLIIFNKDQG 721
GPLII+N DQG
Sbjct: 203 GPLIIYNNDQG 213
Score = 70.9 bits (166), Expect = 1e-12
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +1
Query: 82 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHK 258
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K AGH+
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQ 58
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 37.1 bits (82), Expect = 0.014
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = +3
Query: 243 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 404
GGW Q WG G+ + R GGG R G +G M GG P W R
Sbjct: 14 GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +3
Query: 243 GGWSQTSAESWGT--GRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 398
GG + WG G + R P GGG R G +G M GG P + W
Sbjct: 54 GGMGRGPGGGWGRMQGGGMGRGP---GGGLGRGPGGGWGRMQEGGMGRGPGQGW 104
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 36.7 bits (81), Expect = 0.019
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = +3
Query: 243 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 404
GGW Q WG G+ + R GGG R G +G M GG P W R
Sbjct: 258 GGWGQGPGGGWGRGQGRG-MGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 369 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWF 256
HH CY H Y Y+ H H + + H YP RH++
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Frame = -1
Query: 369 HHDTCYRRHPDRTYGYHHHGHAEFGQQH-------VRYPMIRHWFVTSLL 241
HH RH R + +HHH H E+ ++H + +IRH F+ ++
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRHRYFTDINITIQIIRHHFIIIII 373
>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 328 WVPPPRTRGIRATARPVPHD 269
W+PP RTR R T PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 369 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFVTSLL 241
HH + RH R + YHHH + H +P FVT+++
Sbjct: 570 HHHLHHHRHHHRHHHYHHHHY----PHHHHHPCTIIIFVTTII 608
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +3
Query: 210 QELEAALLREQGGWSQTSAESWGTGRA----VARIPR-VRGGGTHRS 335
+ E+AL E+ W+Q AES T RA +AR+ R GT RS
Sbjct: 3432 EHAESALAAERAQWAQEKAESQNTIRAANEEIARLKEDARKAGTERS 3478
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 378 TYVHHDTCYRRHPDRTYGYHHHGHA 304
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/55 (34%), Positives = 22/55 (40%)
Frame = +1
Query: 448 QQPLLLLASQRSFRLEDTLLKDSRSSLGCSRQSPGDQQDQTGCHLPEAPQGMV*Y 612
Q PLLLL + + R +D R S PG Q G P P GM Y
Sbjct: 546 QSPLLLLTPKHNGRQKDLENSFERPEFRRSHSQPGQFWQQAGAQFPSHP-GMFPY 599
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 258 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 374
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 354 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRH 262
Y +HP T+ YHH H + ++ ++P + H
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTH 442
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 354 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRH 262
Y +HP T+ YH H + H ++P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261
>SB_42653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 445 WQQPLLLLASQRSFRLEDTLLKDSRSSLGCS 537
W + +L + S R+FRL +DS+ +L C+
Sbjct: 17 WLKVILPVMSPRAFRLTPLFFQDSKGTLACA 47
>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 333 TYGYHHHGHAEFGQQHVRYPMI-RHWFVTSLLAHAVGLP-RVLGHRNVN 193
+Y +HHHG E Q V I R W L +H P RV+G ++
Sbjct: 21 SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 149 GRGLAAPCTVSLFSEYTDTKGRATDRLI 66
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)
Length = 278
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 360 TCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFVTSLL 241
TC+ HP + Y H+ H F Q H + RH+ TS L
Sbjct: 52 TCFPYHPHYHHHYRHNDH-YFHQDH----LYRHYLSTSAL 86
>SB_45162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 694 GSLTLDTTTVAHFTLTSTKTL-RLVHFKDIRPCLEAPQED 578
G+LTL T TLT T TL +V F+ + + +PQ+D
Sbjct: 85 GTLTLTLTLTLTLTLTLTLTLTEIVIFEKLSQPIVSPQQD 124
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,498,102
Number of Sequences: 59808
Number of extensions: 490700
Number of successful extensions: 1709
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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