Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0238
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   113   9e-26
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    29   3.4  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    29   3.4  
Z77664-1|CAB01216.2|  900|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    28   5.9  
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  113 bits (273), Expect = 9e-26
 Identities = 54/91 (59%), Positives = 58/91 (63%)
 Frame = +3

Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 434
           Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH        
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQK 119

Query: 435 XXXXXXXXXXXXXXXXXQARGHIIERFPIFP 527
                            QARGH+I++    P
Sbjct: 120 RYAVSSAIAASGIPALLQARGHVIDQVAEVP 150



 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 38/69 (55%), Positives = 55/69 (79%)
 Frame = +2

Query: 509 KIPDLPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 688
           ++ ++PLVV+DKV+   KTK+AV+FLRR   W+DI KVY S+R RAGKGK+RNR+  Q+ 
Sbjct: 145 QVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKL 204

Query: 689 GPLIIFNKD 715
           GP++I+ +D
Sbjct: 205 GPVVIYGQD 213



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +1

Query: 82  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAG 58


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 518 DLPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGP 694
           D+   V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P
Sbjct: 408 DIRRDVVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSP 467

Query: 695 LIIFNKD 715
              F+KD
Sbjct: 468 QPFFSKD 474


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 518 DLPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGP 694
           D+   V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P
Sbjct: 408 DIRRDVVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSP 467

Query: 695 LIIFNKD 715
              F+KD
Sbjct: 468 QPFFSKD 474


>Z77664-1|CAB01216.2|  900|Caenorhabditis elegans Hypothetical
           protein F53H10.2 protein.
          Length = 900

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 388 RSPGGAGTVASTSDSGERPWQQPLLLLASQRSFRLEDTLLKDSRSSLGCSRQSP 549
           R+P G     ST    E P+  P +L   +    L   ++K + SSL  + QSP
Sbjct: 293 RTPRGTPLNISTVPGTELPYTPPPILAPMRNGSGLFCQIVKSANSSLPVAEQSP 346


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +2

Query: 254 TNQC--RIMGYRTCCCPNSAC 310
           TN+C  +  G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +2

Query: 254 TNQC--RIMGYRTCCCPNSAC 310
           TN+C  +  G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 682 LDTTTVAHFTLTSTKTLRLVHFKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 530
           L+  +VA   L  TKT+RL+    IRP      + + L  + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 539 RLQPREDRESFNNVSSSLNER 477
           R QP   R S NN+SSSL+ R
Sbjct: 24  RRQPHHSRSSSNNISSSLHSR 44


>AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical
           protein T28C12.3 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -3

Query: 718 LILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVHFKDIR 605
           L++++ +E + TL  TTVA+F+L       L HF+ ++
Sbjct: 309 LVILDQWEEAKTLSLTTVAYFSLI---VKHLYHFESLK 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,135,787
Number of Sequences: 27780
Number of extensions: 347943
Number of successful extensions: 1163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)