Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0238
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.96 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.7  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
 Frame = -2

Query: 521 DRESFNNVSSSLNE---RW-DASSSNGCCQGRSPLSEVD 417
           DRE+FN + SSL+E   R+ D+SSS    + R+ + E++
Sbjct: 318 DRETFNQLISSLDEIRTRYKDSSSSVEGWENRATIPELN 356


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 324 YHHHGHAEFGQQHVRY 277
           +HHH H     QH+ Y
Sbjct: 351 HHHHHHQTQSLQHLHY 366


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 619 FKDIRPCLEAPQEDDSLFG 563
           F++  P L  P  DD LFG
Sbjct: 471 FEEPLPSLPLPGADDDLFG 489


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 336 GQGAFGNMCRGGRMFAP 386
           G G FG++CRG     P
Sbjct: 640 GGGEFGDVCRGKLKLPP 656


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/16 (37%), Positives = 7/16 (43%)
 Frame = +2

Query: 275 GYRTCCCPNSACPWWW 322
           G+    C N    WWW
Sbjct: 353 GFLQPVCQNEMNKWWW 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,649
Number of Sequences: 438
Number of extensions: 3839
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)