Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0237
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 47 2e-06
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 47 2e-06
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.031
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 31 0.12
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 27 2.0
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 27 2.0
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 27 2.0
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 27 3.5
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 26 4.7
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb... 26 4.7
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 26 6.1
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 26 6.1
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 26 6.1
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 6.1
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 26 6.1
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 25 8.1
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 25 8.1
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/59 (40%), Positives = 29/59 (49%)
Frame = +3
Query: 87 QAHHYASQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGMLSLESSA 263
+ + Y F L PE G LSG A S+L L KIW L+DID DGM + A
Sbjct: 5 EKNKYWEIFRGLNPENGYLSGSKAAGVLRSSKLSSDKLEKIWDLADIDDDGMFDFDEFA 63
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 47.2 bits (107), Expect = 2e-06
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 60 NDIWSISEAQAHHYASQFSQL-RPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKD 236
+D W+I + FS + + +G +SG A FF S+LP L +IW LSD + +
Sbjct: 250 SDPWAIPSQDLTSFCQLFSNVDKAHKGYVSGSEAYSFFLASKLPEDVLAQIWDLSDTNSN 309
Query: 237 GMLSLESSA*PCISLY 284
G L++ CISLY
Sbjct: 310 GKLNIGEF---CISLY 322
Score = 38.3 bits (85), Expect = 0.001
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Frame = +3
Query: 75 ISEAQAHHYASQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGMLSLE 254
IS + Y F+ + P GL+ G A F ++ L L ++W L D K G L +
Sbjct: 130 ISSDEMTRYQQMFTTVCPTDGLMDGDRASSIFGRAPLSTEILARVWNLVDTHKRGALDIR 189
Query: 255 --SSA*PCISLYCGGTIFRYRRCYPHRSYQRSIRASHNASSLPTSLTSAP 398
++ I+L G++ +S SI S AS+ TS SAP
Sbjct: 190 EFNTGMHIINLLLNGSL---------KSPPVSISPSFIASAASTSSVSAP 230
Score = 33.1 bits (72), Expect = 0.041
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 135 GLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGMLS 248
G+++G+ A F EKS L L +IWQ++D + G L+
Sbjct: 26 GVITGEEAVPFLEKSGLAPQVLGQIWQIADAENRGFLT 63
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.5 bits (73), Expect = 0.031
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 75 ISEAQAHHYASQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGML 245
+S A + F +S + + +S+LP L KIW+LSD + G L
Sbjct: 277 VSAADQAKFEQLFKSAVGREEAMSSEIGKAILVRSKLPTVQLSKIWRLSDTTRSGRL 333
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 31.5 bits (68), Expect = 0.12
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 426 TSISHRNRTVALIRTMPKRVAGLRS---AIRGFAPKADAQPNKEWTKFVDSPTSSVSS 590
T++SHR R PK + S AIRGF P + P + W K +D VSS
Sbjct: 100 TAVSHRPGA----RFGPKGIRSASSRQMAIRGFNPSLNVNPYESWAKILDCGDIPVSS 153
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 223 SDSCQIFLKSGTGSLDFSKNSLAVCPDRSPR 131
++ C++FL TG +++ N C + SP+
Sbjct: 155 AELCRVFLSYATGCVNYGHNVALTCFENSPK 185
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 338 KVDSRFSQRVVTTDL-VDLGAEMFGSGTSADFNFAPKSDSGADPYDA 475
K+DS+ + +V D + F S D+N+A K SG D Y+A
Sbjct: 437 KLDSKSRKLIVILDPHIKNDPNYFVSKELIDYNYAVKDKSGVDNYNA 483
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 309 RRCYPHRSYQRSIRASHNASSLPTSLTSAPRCSARGLQQTS 431
+R H++ S SH+ +S +SL +AP +A+ QT+
Sbjct: 727 KRSNVHKNNNASNTFSHSNASTSSSLNAAPNTTAKSSSQTA 767
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 3.5
Identities = 23/76 (30%), Positives = 33/76 (43%)
Frame = +3
Query: 375 PTSLTSAPRCSARGLQQTSISHRNRTVALIRTMPKRVAGLRSAIRGFAPKADAQPNKEWT 554
PT+ TSAP S G+ SH+ + A+ K SA AP +++ E
Sbjct: 293 PTATTSAPSASPTGVPVEEESHKATSDAVPPAEAKPEPVPASAAER-APTSESTTVPE-- 349
Query: 555 KFVDSPTSSVSSPGPK 602
V S T +S P P+
Sbjct: 350 TIVASTTKVISEPAPR 365
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +3
Query: 471 MPKRVAGLRSAIRGFAPKADAQPNKEWTKFVDSPTSSVSSPGPKPVNFDFQRAPSNE 641
M AGL +A+R P P + W K V V+ V D A SN+
Sbjct: 271 MESGTAGLIAALRDGCPVGPPPPERGWEKLVSDDDDDVNDNVSTSVR-DLTAADSNK 326
>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 4.7
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +2
Query: 341 VDSRFSQRVVTTDLVDLGAEMFGSGTSADFNFAPKSDSGADPYDAKTSRRPEERHP---- 508
++ F +V T + L ++ TS +FNF SD+ Y +S P++++P
Sbjct: 240 IEFMFWASMVMTHISRLAEDLIIYSTS-EFNFVTLSDA----YSTGSSIMPQKKNPDSLE 294
Query: 509 RLRSKSGR 532
LR KSGR
Sbjct: 295 LLRGKSGR 302
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 341 VDSRFSQRVVTTDLVDLGAEMFGSGTSADFNFAPKSDSGADPYDAKTSRRPEERH 505
VD + + L +LG FG+G A + + P A+ +R PEER+
Sbjct: 260 VDQTAAANTIQNLLNNLGGAGFGAGLGDAGLGAGLGGAASPPAPAQDTRPPEERY 314
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 490 PATRFGIVRIS-ATVRFRCEIEVC*SPRAEHLGAEVNEVGSD 368
P FG R +++RF E+ SP + +G ++ +G+D
Sbjct: 144 PVHDFGFFRYDPSSIRFHDVTEISLSPESAKVGIDIRIIGND 185
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 420 EVPEPNISAPRSTRSVVTTRCEKRES 343
E+PEP++++P + T+ C K S
Sbjct: 105 ELPEPHVTSPTKSEFATTSTCMKWSS 130
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 366 SSLPTSLTSAPRCSARGLQQTSISHRNRTVALIRTMPKRVAGL 494
SSLP+S S S +S S R +T+ T+P RVA L
Sbjct: 425 SSLPSSNASEKDGSILATANSS-SSRRQTIMFSATLPPRVANL 466
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +1
Query: 1 QKKNRPIVIHLKRMAREILAMTSGLSVRRRRITTRHNSHNCDPNEDFCPDKLQGYFSRNQ 180
Q K RP+ H + + I+ + S R RI+ H NED D L F+ Q
Sbjct: 71 QDKIRPLWRHYFQNTQGIIFVVD--SNDRERISEAHEELQRMLNEDELRDALLLVFANKQ 128
Query: 181 DFP 189
D P
Sbjct: 129 DLP 131
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 483 LVLASYGSAPLSDFGAKLKSAEV 415
LVLA G AP++ G L+SA+V
Sbjct: 750 LVLADVGIAPINGSGIALESADV 772
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 133 EDFCPDKLQGYFSRNQDFPYPI*EKFGNY 219
+DF KL+ RN P P EK NY
Sbjct: 350 KDFYISKLEKSLDRNDTTPVPSDEKLSNY 378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,101
Number of Sequences: 5004
Number of extensions: 53600
Number of successful extensions: 210
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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