Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0237
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011...    50   2e-06
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170...    50   2e-06
02_01_0436 - 3166764-3166949,3167115-3167258,3167343-3167469,316...    36   0.042
06_03_1194 + 28305388-28305472,28305603-28305682,28305771-283058...    35   0.074
04_04_1528 + 34172149-34172233,34172335-34172414,34172621-341726...    35   0.074
01_06_1354 - 36599904-36600643,36600851-36601352                       30   1.6  
05_04_0176 + 18749945-18749969,18750186-18750751,18750876-187509...    30   2.1  
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    30   2.1  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    29   3.7  
10_08_0307 - 16654691-16654890,16656230-16656698                       29   4.8  
01_06_1782 - 39842133-39842160,39842531-39842657,39842980-39844675     29   4.8  
10_08_0383 - 17424194-17425567                                         28   6.4  
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281...    28   6.4  
06_03_1500 + 30602846-30603185,30603244-30603323,30603477-306035...    28   6.4  
02_02_0415 - 9981345-9981440,9981716-9981784,9982035-9982155,998...    28   6.4  
03_02_0206 + 6402526-6403933,6405018-6405637                           28   8.5  

>06_03_1490 +
           30497980-30498102,30499034-30500156,30500914-30501132,
           30501228-30501454,30501810-30501884,30502250-30502321,
           30502765-30502863,30502975-30503046,30503131-30503245,
           30503455-30503523,30503625-30503952,30504320-30504437,
           30504522-30505448
          Length = 1188

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +3

Query: 75  ISEAQAHHYASQFSQLRPER-GLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGMLS 248
           I++A    Y   F ++  +R G ++G+ AR  F   RLP   LRK+W LSD DKDGMLS
Sbjct: 376 ITQADVRKYMIVFIKVDRDRDGKITGEEARNLFLSWRLPRELLRKVWDLSDQDKDGMLS 434



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +3

Query: 135 GLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGMLSLE 254
           G +SGQ A  FF+ S LP P L +IW  +D ++ G L  E
Sbjct: 18  GRISGQEAVAFFKASALPQPVLAQIWTYADKNRTGFLGRE 57


>03_01_0216 -
           1700223-1700666,1700749-1700860,1701534-1701837,
           1702358-1702426,1702543-1702657,1702740-1702811,
           1702918-1703016,1703148-1703219,1703394-1703465,
           1704940-1705154,1705277-1705495,1705792-1707076,
           1707270-1707398
          Length = 1068

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
 Frame = +3

Query: 75  ISEAQAHHYASQFSQLRPER-GLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGMLSL 251
           ++++    Y   F+ +  +R G ++G  AR  F   RLP   L+++W LSD D DGMLSL
Sbjct: 432 VTQSDIQKYTKVFADVDRDRDGKITGAEARTLFLSWRLPREILKQVWDLSDQDNDGMLSL 491

Query: 252 ESSA*PCISLY 284
                 CI+LY
Sbjct: 492 REF---CIALY 499



 Score = 33.1 bits (72), Expect = 0.23
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 135 GLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGML 245
           G +SGQ A  FF+ + LP   L ++W  +D +K G L
Sbjct: 20  GRISGQEAVAFFQGANLPQQVLAQVWMHADKNKTGFL 56


>02_01_0436 -
           3166764-3166949,3167115-3167258,3167343-3167469,
           3167746-3167825,3167933-3168184,3168271-3168399,
           3169039-3169088,3169221-3169323,3169429-3169548,
           3169725-3169786,3169873-3169915,3169995-3170183,
           3170299-3170367,3170460-3170539,3170648-3170723
          Length = 569

 Score = 35.5 bits (78), Expect = 0.042
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +3

Query: 84  AQAHH--YASQFSQLRPER-GLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGML 245
           ++ HH  YA  F+   P+  G ++G  A  FF  S L   DL+++W ++D  + G L
Sbjct: 9   SKEHHKIYAGWFAVADPDGDGRVTGADATKFFAMSGLSRADLKQVWAIADTKRQGFL 65


>06_03_1194 +
           28305388-28305472,28305603-28305682,28305771-28305839,
           28305936-28305993,28306082-28306134,28306229-28306271,
           28306360-28306421,28306914-28307027,28307183-28307285,
           28307377-28307426,28308138-28308266,28308340-28308591,
           28308684-28308763,28309040-28309166,28309247-28309390,
           28309849-28310034
          Length = 544

 Score = 34.7 bits (76), Expect = 0.074
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 135 GLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGML 245
           G ++G  A  FF  S+LP  DL+++W ++D  + G L
Sbjct: 32  GRITGPDAIKFFAMSKLPRADLKQVWAIADSKRQGYL 68


>04_04_1528 +
           34172149-34172233,34172335-34172414,34172621-34172689,
           34172780-34172837,34173296-34173357,34173441-34173554,
           34173862-34173964,34174085-34174134,34174335-34174724,
           34174918-34175244,34175360-34175689
          Length = 555

 Score = 34.7 bits (76), Expect = 0.074
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 69  WSISEAQAHHYASQFSQLRPER-GLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGML 245
           W + E Q   Y   FS    +  G ++G+ A  FF  S L  P+L+++W ++D  + G L
Sbjct: 10  WGLRE-QREAYLRWFSLADDDGDGRVTGKDALKFFAMSNLSRPELKQVWAIADSKRQGYL 68


>01_06_1354 - 36599904-36600643,36600851-36601352
          Length = 413

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 313 LRYRNIVPPQYNEMHGYAELSNESIPSLSMSDSCQIFLKSGTGSLD 176
           LR  +++ P++NE   +  +S+ S  SL    S   ++KSG  S D
Sbjct: 359 LRKNSLLGPEFNEFEDHPPISDSSFASLVSEISSIAWMKSGLQSSD 404


>05_04_0176 +
           18749945-18749969,18750186-18750751,18750876-18750944,
           18752128-18752325,18752791-18752922,18753658-18753744,
           18753845-18754288,18754644-18754811,18755129-18755359,
           18755893-18756008,18756125-18756407
          Length = 772

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 346 IDLWYERWG*HLRYRNIVPPQYNEMHGYAE-LSNESIPSLSMSDSCQIF 203
           +D ++ERWG  +     +PP+ NE+    E L  +++   S S + ++F
Sbjct: 585 VDCFHERWGALVAQEQRIPPEKNELVNEEEKLCVKALDGFSASAAAKVF 633


>02_05_1052 +
           33770355-33773981,33774217-33774336,33774880-33774996,
           33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +3

Query: 309 RRCYPHRSYQRSIRASHNAS--SLPTSLTSAPRCSARGLQQTSISHRNRTVALIRTMPKR 482
           R   P R      RA+  +S  S PTS +SAP   +     +S   R+   A  ++ P+R
Sbjct: 82  RPATPSRLSPGGSRAAAPSSRISAPTSPSSAPSSPSSSSSSSSTPVRDAVAAESQSAPRR 141

Query: 483 VAGLRSAIRGFAP 521
           +AG R+   G  P
Sbjct: 142 LAGGRAPPDGLWP 154


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 628 RRRTRSENFSSGRAAGYTRSFSRRRDS 708
           R R+R  ++S  R+  Y+RS S RRDS
Sbjct: 148 RGRSRGRSYSRSRSRSYSRSQSPRRDS 174


>10_08_0307 - 16654691-16654890,16656230-16656698
          Length = 222

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 506 DGAPQAGDSF-WHRTDQRHCPISVRN*SLLKS 414
           DG+   G S+ W+R   RHCP+ V     +KS
Sbjct: 70  DGSDGDGSSWPWNRAAHRHCPLGVEKRRRVKS 101


>01_06_1782 - 39842133-39842160,39842531-39842657,39842980-39844675
          Length = 616

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -2

Query: 505 MALLRPATRFGIVRISATVRFRCEIEVC*SPRAEHLGAEVNEVGSDDAL*EAR 347
           +A+L   T  G+V     + +R E ++   P+ EH GA ++ +G    + +AR
Sbjct: 415 LAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQAR 467


>10_08_0383 - 17424194-17425567
          Length = 457

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 540 NKEWTKFVDSPTSSVSSPGPKPVNFDFQRAPSNEIRKFFI 659
           N  + +F+ +P+SS SSP P P++    R PS  I   F+
Sbjct: 138 NASYYEFLFTPSSSSSSPKPYPLSLP-HRLPSTAIPFTFV 176


>10_01_0266 +
           2816391-2818898,2818934-2819162,2819369-2819444,
           2819776-2819830,2822042-2822110,2823077-2823321,
           2824029-2824065
          Length = 1072

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
 Frame = +3

Query: 324 HRSYQRS--IRASHNASSLPTSLTSAPRCSARGLQQTSISHRNRTVALIRTMPKRVAGLR 497
           HRS  R   + +S + SS  TS T++   S   ++Q  +   + T +    +    +  R
Sbjct: 11  HRSSHRHFLLSSSFHLSSAATSTTTSSTSSYDPIKQFLLLLPSNTHSHHHHLSLPASLRR 70

Query: 498 SAIRGFAPKADAQPNKEWTKF-VDSPTSSVSSPGPKPVNF 614
            A+   A      P        + SPTSS SSP P P  F
Sbjct: 71  DAVLALARLIKVSPPCLLALHALTSPTSSSSSPSPLPARF 110


>06_03_1500 +
           30602846-30603185,30603244-30603323,30603477-30603566,
           30603677-30603909,30604126-30604204,30604320-30604464,
           30604815-30604877,30605343-30605374,30605475-30605516,
           30605599-30605712
          Length = 405

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 443 KSDSGADPYDAKTSRRPEERHPRLRSKSGRAAEQRVDEV 559
           K++    P   K    PEE+HP  +  +GR+ ++R  +V
Sbjct: 317 KAEEKKGPAAKKQRASPEEKHPTGKKSAGRSQKRRKTQV 355


>02_02_0415 -
           9981345-9981440,9981716-9981784,9982035-9982155,
           9982441-9982622,9983320-9984921
          Length = 689

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = +3

Query: 372 LPTSLTSAPRCSARGLQQTSISHRNRTVALIRTMPKRVAGLRSAIRGFAPKADAQ 536
           LP + +S+P  S R L    +S   R V  +     RVAG R+A    A  A AQ
Sbjct: 17  LPATTSSSPAASLRRLLLPPLSCHARQVLDVMPQGDRVAGPRAAEGAGAKGATAQ 71


>03_02_0206 + 6402526-6403933,6405018-6405637
          Length = 675

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +3

Query: 339 RSIRASHNASSLPTSLTSAPRCSARGLQQTS---ISHRNRTVALIRTMPKRVAGLRSAIR 509
           +++R++   S+LP+  +S P C+ +G+   S      R     L+ T+P  V G  SA+R
Sbjct: 36  QALRSAVGKSALPSWNSSTPTCNWQGVTCESGRVTELRLPGAGLMGTLPSNVLGNLSALR 95

Query: 510 GFAPKADA 533
             + + +A
Sbjct: 96  TLSLRYNA 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,481,080
Number of Sequences: 37544
Number of extensions: 386205
Number of successful extensions: 1325
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)