Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0237
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43947| Best HMM Match : efhand (HMM E-Value=2e-11)                  58   5e-09
SB_23986| Best HMM Match : efhand (HMM E-Value=0.0023)                 58   5e-09
SB_59805| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   6e-06
SB_39730| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)                30   2.1  
SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)            29   2.8  
SB_40367| Best HMM Match : ECH (HMM E-Value=3.3)                       29   4.9  
SB_58068| Best HMM Match : 7tm_1 (HMM E-Value=0.0018)                  28   6.5  
SB_31763| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_22301| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=9.3)            28   6.5  
SB_48245| Best HMM Match : efhand (HMM E-Value=0.086)                  28   8.6  
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   8.6  

>SB_43947| Best HMM Match : efhand (HMM E-Value=2e-11)
          Length = 482

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 26/68 (38%), Positives = 38/68 (55%)
 Frame = +3

Query: 60  NDIWSISEAQAHHYASQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDG 239
           +++WS+  A    Y   F  L+P  GLL G   +     S+LP+  L ++W LSDID+DG
Sbjct: 29  SNVWSVKPADKTKYDHIFEGLKPVNGLLPGDKVKPVLLNSKLPIDVLGRVWDLSDIDRDG 88

Query: 240 MLSLESSA 263
           ML  +  A
Sbjct: 89  MLDADEFA 96



 Score = 35.5 bits (78), Expect = 0.043
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 69  WSISEAQAHHYASQFSQLRPER-GLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGML 245
           W +  A    Y S F     +  GL+SG+  +  F +S L  P L  IW L D+   G L
Sbjct: 164 WVVPAADKLKYDSIFKTTDKDTDGLVSGEEVKNVFIQSGLAQPVLAHIWGLCDLTNSGRL 223

Query: 246 SLESSA 263
           + E  A
Sbjct: 224 NAEQFA 229


>SB_23986| Best HMM Match : efhand (HMM E-Value=0.0023)
          Length = 155

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 26/68 (38%), Positives = 38/68 (55%)
 Frame = +3

Query: 60  NDIWSISEAQAHHYASQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDG 239
           +++WS+  A    Y   F  L+P  GLL G   +     S+LP+  L ++W LSDID+DG
Sbjct: 13  SNVWSVKPADKTKYDHIFEGLKPVNGLLPGDKVKPVLLNSKLPIDVLGRVWDLSDIDRDG 72

Query: 240 MLSLESSA 263
           ML  +  A
Sbjct: 73  MLDADEFA 80


>SB_59805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 27/67 (40%), Positives = 35/67 (52%)
 Frame = +3

Query: 63  DIWSISEAQAHHYASQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGM 242
           D W + + +   Y   F  L P  G LSG  A+    KS+LP   L +IW+LSDID DG 
Sbjct: 340 DTWVVEDFKPK-YDELFKTLGPVDGKLSGAKAKKEMVKSKLPNTQLGRIWKLSDIDHDGC 398

Query: 243 LSLESSA 263
           L  +  A
Sbjct: 399 LDEDEFA 405


>SB_39730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 17/40 (42%), Positives = 27/40 (67%)
 Frame = +3

Query: 144 SGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGMLSLESSA 263
           +G+ AR  F +SRLP+ +L KIW+L+D+ +D  L +   A
Sbjct: 9   TGEQARSLFIRSRLPLAELSKIWKLADVTRDNFLDVSEFA 48


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 471  MPKRVAGLRSAIRGFAPKADAQPNKEWTKFVDS 569
            M + +A LRS ++  A + D  P+K WTK  ++
Sbjct: 4077 MDRLMANLRSKLQSLAEEVDGAPDKSWTKMSET 4109


>SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 828

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/97 (23%), Positives = 40/97 (41%)
 Frame = +3

Query: 321 PHRSYQRSIRASHNASSLPTSLTSAPRCSARGLQQTSISHRNRTVALIRTMPKRVAGLRS 500
           P  S   S R+ +++ S   S+ S+P     G Q+T    ++      R +PKR     S
Sbjct: 89  PVTSRPASSRSGYSSKSGTKSIHSSPTAMYLGFQRTRC--KSAPPRHFRYVPKRPQTASS 146

Query: 501 AIRGFAPKADAQPNKEWTKFVDSPTSSVSSPGPKPVN 611
                 P +   P + W     S ++S S   P+ ++
Sbjct: 147 GAGSSRPVSRGAPQRAWQLRTSSASTSRSLLSPEDIH 183


>SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)
          Length = 1232

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +3

Query: 555 KFVDSPTSSVSSPGPKPVNFDFQRAPSNEIRKFFIRSRCGLHQKLQPATGLR 710
           K + S      S G +P++   ++ PS+ +RK     +  LHQ+  P++G+R
Sbjct: 828 KTLSSGVRKAHSSGKRPLHQ--RKTPSSGVRKAHSSGKRSLHQRKTPSSGVR 877


>SB_40367| Best HMM Match : ECH (HMM E-Value=3.3)
          Length = 231

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 25  IHLKRMAREILAMTSGLSVRRRRITTRHNS--HNCDPNEDFC 144
           IHLKR  R    + SG+   R +I  RHN+  H C PN++ C
Sbjct: 38  IHLKREQR----LLSGMW--RSKIRYRHNTSQHQCCPNKELC 73


>SB_58068| Best HMM Match : 7tm_1 (HMM E-Value=0.0018)
          Length = 241

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 70  GLSVRRRRITTRHNSHNCDPNEDFCPDKLQGYFS 171
           G   R  R+       +CDP  DF P++   YF+
Sbjct: 3   GFYFRAYRVNKSARGLSCDPKYDFAPEEFPKYFA 36


>SB_31763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 70  GLSVRRRRITTRHNSHNCDPNEDFCPDKLQGYFS 171
           G   R  R+       +CDP  DF P++   YF+
Sbjct: 158 GFYFRAYRVNKSARGLSCDPKYDFAPEEFPKYFA 191


>SB_22301| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=9.3)
          Length = 350

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 534 QPNKEWTKFVDSPTSSVSSPGPKPVNFDFQRAPSNEIRKFFIRSRCGLHQK 686
           Q + E +  V+   SS  S    P   D   AP +  +  F RSR G+H++
Sbjct: 103 QKDSESSGVVNPLCSSSQSSDDSPGEMDHLIAPGSPPKSVFSRSRPGIHER 153


>SB_48245| Best HMM Match : efhand (HMM E-Value=0.086)
          Length = 285

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 207 IWQLSDIDKDGMLSLE 254
           IW LSDID+DG ++++
Sbjct: 37  IWSLSDIDRDGKMTMQ 52


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
 Frame = +3

Query: 285 CGGTIFRYRRCYPHRSYQRSIRASHNASSLPT-----SLTSAPRCSARGLQQTSISHRNR 449
           CG T  R      H S     RAS +A S PT     SL+  P  S++ L  + I   N 
Sbjct: 257 CGKTFARPTWWAKHESAHNCKRASPSARSSPTPSESPSLSKIP-SSSKTLSPSKIFEHNE 315

Query: 450 TVALIRTMPK 479
           T   +   PK
Sbjct: 316 TEPTVEKKPK 325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,762,558
Number of Sequences: 59808
Number of extensions: 423121
Number of successful extensions: 1681
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1675
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)