Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0237
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF357878-1|AAK27716.1| 589|Caenorhabditis elegans receptor-medi... 52 5e-07
AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 52 5e-07
AF357876-1|AAK27714.1| 576|Caenorhabditis elegans receptor-medi... 52 5e-07
AC006695-15|AAO25981.1| 555|Caenorhabditis elegans Receptor med... 52 5e-07
AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor med... 52 5e-07
AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor med... 52 5e-07
AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor med... 52 5e-07
AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor med... 52 5e-07
AC006695-10|AAF39980.1| 589|Caenorhabditis elegans Receptor med... 52 5e-07
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical... 49 4e-06
U29244-9|AAN60507.1| 681|Caenorhabditis elegans Eps15 (endocyto... 46 3e-05
U29244-8|AAC71084.1| 751|Caenorhabditis elegans Eps15 (endocyto... 46 3e-05
AY027560-1|AAK13051.1| 796|Caenorhabditis elegans EHS-1 protein. 46 3e-05
AL132948-37|CAD31830.2| 410|Caenorhabditis elegans Hypothetical... 39 0.003
Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical pr... 29 3.3
>AF357878-1|AAK27716.1| 589|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform I protein.
Length = 589
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +3
Query: 105 SQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGMLSLESSA 263
S F L P G LSG+ A+ KS+LP L K+W+L+DIDKDG L + A
Sbjct: 493 STFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLDADEFA 545
>AF357877-1|AAK27715.1| 835|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform II protein.
Length = 835
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +3
Query: 105 SQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGMLSLESSA 263
S F L P G LSG+ A+ KS+LP L K+W+L+DIDKDG L + A
Sbjct: 739 STFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLDADEFA 791
>AF357876-1|AAK27714.1| 576|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform IV protein.
Length = 576
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +3
Query: 105 SQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGMLSLESSA 263
S F L P G LSG+ A+ KS+LP L K+W+L+DIDKDG L + A
Sbjct: 480 STFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLDADEFA 532
>AC006695-15|AAO25981.1| 555|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform f protein.
Length = 555
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +3
Query: 105 SQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGMLSLESSA 263
S F L P G LSG+ A+ KS+LP L K+W+L+DIDKDG L + A
Sbjct: 459 STFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLDADEFA 511
>AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform d protein.
Length = 576
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +3
Query: 105 SQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGMLSLESSA 263
S F L P G LSG+ A+ KS+LP L K+W+L+DIDKDG L + A
Sbjct: 480 STFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLDADEFA 532
>AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform a protein.
Length = 786
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +3
Query: 105 SQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGMLSLESSA 263
S F L P G LSG+ A+ KS+LP L K+W+L+DIDKDG L + A
Sbjct: 690 STFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLDADEFA 742
>AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform e protein.
Length = 613
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +3
Query: 105 SQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGMLSLESSA 263
S F L P G LSG+ A+ KS+LP L K+W+L+DIDKDG L + A
Sbjct: 517 STFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLDADEFA 569
>AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform b protein.
Length = 835
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +3
Query: 105 SQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGMLSLESSA 263
S F L P G LSG+ A+ KS+LP L K+W+L+DIDKDG L + A
Sbjct: 739 STFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLDADEFA 791
>AC006695-10|AAF39980.1| 589|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform c protein.
Length = 589
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +3
Query: 105 SQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGMLSLESSA 263
S F L P G LSG+ A+ KS+LP L K+W+L+DIDKDG L + A
Sbjct: 493 STFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLDADEFA 545
>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
protein Y116A8C.36 protein.
Length = 1097
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +3
Query: 69 WSISEAQAHHYASQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGMLS 248
W +S+A+ + F QL + + TAR +S LP L +IW LSD+DKDG L
Sbjct: 5 WEVSDAEYQKNFAMFGQLTGGQPFMDAVTARNALMRSNLPTQVLSQIWALSDLDKDGRLD 64
Query: 249 L 251
+
Sbjct: 65 I 65
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 69 WSISEAQAHHYASQFSQLRPER-GLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGML 245
W+I Y+ F+ L ER G LS Q R S LP L IW LSD++KDG L
Sbjct: 170 WAIPHHNKLKYSQLFNALDKERLGSLSSQVGRSALGLSGLPTNVLAHIWFLSDVNKDGKL 229
Query: 246 SLESSA 263
S++ A
Sbjct: 230 SVDEYA 235
>U29244-9|AAN60507.1| 681|Caenorhabditis elegans Eps15 (endocytosis
protein) homologoussequence protein 1, isoform b
protein.
Length = 681
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/59 (42%), Positives = 28/59 (47%)
Frame = +3
Query: 69 WSISEAQAHHYASQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGML 245
W I+ Y S F L P G LSG R S L L +IW+LSD DKDG L
Sbjct: 111 WPITPTDQAKYDSIFQSLNPVNGKLSGAHVRPVLMNSGLDAHALARIWELSDQDKDGNL 169
>U29244-8|AAC71084.1| 751|Caenorhabditis elegans Eps15 (endocytosis
protein) homologoussequence protein 1, isoform a
protein.
Length = 751
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/59 (42%), Positives = 28/59 (47%)
Frame = +3
Query: 69 WSISEAQAHHYASQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGML 245
W I+ Y S F L P G LSG R S L L +IW+LSD DKDG L
Sbjct: 111 WPITPTDQAKYDSIFQSLNPVNGKLSGAHVRPVLMNSGLDAHALARIWELSDQDKDGNL 169
>AY027560-1|AAK13051.1| 796|Caenorhabditis elegans EHS-1 protein.
Length = 796
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/59 (42%), Positives = 28/59 (47%)
Frame = +3
Query: 69 WSISEAQAHHYASQFSQLRPERGLLSGQTARLFFEKSRLPVPDLRKIWQLSDIDKDGML 245
W I+ Y S F L P G LSG R S L L +IW+LSD DKDG L
Sbjct: 156 WPITPTDQAKYDSIFQSLNPVNGKLSGAHVRPVLMNSGLDAHALARIWELSDQDKDGNL 214
Score = 34.7 bits (76), Expect = 0.066
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 60 NDIWSISEAQAHHYASQFSQLRPERGLLSGQT-ARLFFEKSRLPVPDLRKIWQLSDIDKD 236
+D ++I+ + F+++ P G A F +KS L +P L +IW+LSD K
Sbjct: 2 DDSYAIATPHNDVFNHAFAEMNPHGAPRIGAAEAATFLKKSNLAMPVLGQIWELSDSQKV 61
Query: 237 GML 245
G L
Sbjct: 62 GSL 64
>AL132948-37|CAD31830.2| 410|Caenorhabditis elegans Hypothetical
protein Y39B6A.38 protein.
Length = 410
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Frame = +3
Query: 60 NDIWSISEAQAHHYASQFSQLRPER-------GLLSGQTARL--FFEKSRLPVPDLRKIW 212
+ ++ I+E Q +Y F L G L G R+ FF++S L + L KIW
Sbjct: 41 DSLFKITEKQQEYYTKCFRHLIKTTQGAADLCGALCGADQRIVAFFKRSSLDMSSLSKIW 100
Query: 213 QLSDIDKDGMLSL 251
L+D+++DG L L
Sbjct: 101 SLADVNEDGWLDL 113
>Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical
protein M01A8.2b protein.
Length = 869
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 465 RTMPKRVAGLR-SAIRGFAPKADAQPNKEWTKFVDSPTSSVSSPGPKPVNFDFQRAPSNE 641
+T PK+ R S + APKA + NKE + ++P +++ K VN + +P+
Sbjct: 319 KTKPKKEIKSRVSLLPPPAPKAPQKENKEGGEMTETPRRTITKTPLKTVNAKAKTSPTPP 378
Query: 642 IRK 650
+ +
Sbjct: 379 VER 381
>Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical
protein M01A8.2a protein.
Length = 937
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 465 RTMPKRVAGLR-SAIRGFAPKADAQPNKEWTKFVDSPTSSVSSPGPKPVNFDFQRAPSNE 641
+T PK+ R S + APKA + NKE + ++P +++ K VN + +P+
Sbjct: 387 KTKPKKEIKSRVSLLPPPAPKAPQKENKEGGEMTETPRRTITKTPLKTVNAKAKTSPTPP 446
Query: 642 IRK 650
+ +
Sbjct: 447 VER 449
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,189,598
Number of Sequences: 27780
Number of extensions: 313150
Number of successful extensions: 1111
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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