Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0236
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    30   0.29 
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    29   0.88 
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    29   0.88 
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo...    28   1.5  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    27   2.7  
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb...    27   2.7  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    26   4.7  

>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
 Frame = +1

Query: 136 NRRDQADLTDLYSITDLLPLPADCEVDLDALTTDIDSFETLRP-RLDPTLSSRARLTSRT 312
           ++RD  + +D YS + L   P +    L +L +  DSF+   P  +  T  S      R 
Sbjct: 147 HKRDNIETSDAYSSSILENSPPNKVQRLSSLDSSQDSFQEEHPGNVTGTTFSSQAPEERI 206

Query: 313 CSARSAYGTTGWTTRSPRI*RHLRAASGPPRPLPAGSTD 429
            S  S       T +S  +   L+ +S  PR L   ST+
Sbjct: 207 ASPISTSSPESLTNQSSSLQSSLQTSSMAPRNLLDQSTE 245


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 608 ILLVFNVQLNQTTP-FGSSMFKAVFKMLLLFINF 706
           +LLVF + LNQ  P +   +FKA   MLL+FI++
Sbjct: 216 VLLVFTILLNQVPPRYYKWIFKA--SMLLMFIDY 247


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 635 NQTTPFGSSMFKAVFKMLLLFINFNK 712
           N+  PFG    + VF++L+ FI+F K
Sbjct: 276 NEIDPFGIGSIREVFRVLVSFIDFGK 301


>SPAC1B3.07c |vps28||ESCRT I complex subunit
           Vps28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 496 LESAFQND-VSTFGFNVQSYLIRIEGENCFGNKRPLRSHSS 615
           LE AF  D VST  FN    L+  + E+CF ++R  ++  S
Sbjct: 44  LEKAFTKDAVSTSDFNSTCELLIQQWESCFSDERVTQAFGS 84


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -2

Query: 569 PSILIK*LCTLNPNVD----TSFWKALSRRGGERSPR 471
           P +L + LC+LNPNV+    + FWK L   G E   R
Sbjct: 515 PPLLCERLCSLNPNVERLAFSVFWK-LDSNGKEIGKR 550


>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 175 ITDLLPLPADCEVDLDALTTDIDSFETLRPRLDPTLSSRARLTSR 309
           I D   L A  EVDL  ++TD+D+ +  R R       + +L S+
Sbjct: 198 IRDAAALGAIREVDLGIISTDVDNLKNGRKRQKKRARMKEKLDSK 242


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 109 EYACLYDDHNRRDQADLTDLYSITDL 186
           EY CLY D N+   A L   YS+  L
Sbjct: 204 EYECLYRDRNQVKGAWLVSFYSVLAL 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,197
Number of Sequences: 5004
Number of extensions: 46846
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)