Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0236
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0192 + 26602247-26602617,26602701-26603016 31 1.2
12_02_0528 + 20059613-20061472 30 1.6
08_01_0876 - 8598664-8599374 30 2.1
04_03_0984 - 21432119-21432157,21432722-21434068 29 2.8
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311... 29 2.8
03_05_0627 - 26240673-26241318,26241713-26242536 29 2.8
12_01_0773 - 7039294-7039422,7039440-7039479,7039557-7039649,703... 29 3.7
03_02_0198 + 6344952-6347483 29 3.7
02_04_0311 + 21936812-21937861 29 3.7
06_01_0902 - 6934236-6935546 29 4.9
12_01_0788 + 7192937-7192994,7193074-7193160,7193242-7193307,719... 28 6.4
07_01_0569 - 4223494-4224261,4224770-4225090 28 8.5
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 28 8.5
01_06_1367 - 36711738-36711774,36711962-36712686,36713217-367132... 28 8.5
>02_05_0192 + 26602247-26602617,26602701-26603016
Length = 228
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -2
Query: 413 GSGRGGPDAALR*RQIRGERVVHPVVPYADLAEHVRDVRRARELKVGSRRGR 258
G+ RGG IR + ++ V+P A A+ RD++R R L GS GR
Sbjct: 10 GTRRGGSGG-----DIRRQELLEVVLPAAVAADGARDLQRPRRLSAGSGCGR 56
>12_02_0528 + 20059613-20061472
Length = 619
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 331 TPISLSMSETSGVHENSKWDPDEDEASRTSRCPS 230
+P+S SMS+ N W D++E R RC S
Sbjct: 508 SPVSSSMSKWGFPSGNPDWGADDEELGRLKRCSS 541
>08_01_0876 - 8598664-8599374
Length = 236
Score = 29.9 bits (64), Expect = 2.1
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Frame = -3
Query: 241 RCPSSAHLSRLRS-PPGEEGDP*WNRDPSDPPDRACCGHHTDRRIPG----NQVH-RQER 80
RC S R S PP +P R P PP R C ++ RR G N V R +
Sbjct: 4 RCHSPPPRHRTSSSPPHRCVEPLHRRAPLSPPRRCRCKNNRRRRAGGFVSPNLVEARSDT 63
Query: 79 RAAVEGPAFPRGRSGQSARVVVAW 8
+ + +G R RSG+ A+ W
Sbjct: 64 QQSGDGGRGAR-RSGRGAKEAATW 86
>04_03_0984 - 21432119-21432157,21432722-21434068
Length = 461
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = -2
Query: 509 KALSRRGGERSPRHRPPYGGALADRMRS-VEPAGSGRGGPDAALR*RQIRGERVVHPVVP 333
+A R GG+ + R Y ALA R+ + + PA S P AA R Q + + P
Sbjct: 115 RASCRGGGDPAQRVAACYAAALAPRLAAGLRPARSSPAAP-AAARAEQFLAYTMFYQASP 173
Query: 332 YADLAEHVRDVRRARELKVGSRR 264
+ A + + G RR
Sbjct: 174 FYQFAHFTANQAIVEAFESGGRR 196
>04_03_0181 -
12327281-12328620,12330922-12331015,12331079-12331183,
12331404-12332592,12333268-12333461
Length = 973
Score = 29.5 bits (63), Expect = 2.8
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Frame = -3
Query: 286 NSKWDPDEDEASRTSRCPSSAHLSRLRSPPGEEG-----DP*WNRDPSDPPDRACCGHHT 122
NS D S +S+ PS+ S+L P + P R P+ R G T
Sbjct: 206 NSLKDMARTAPSASSKAPSTLQKSKLSPRPSPDKAVASLKPITQRSPASVTARG--GRTT 263
Query: 121 ---DRRIPGNQVHRQERRAAVEGPAFPRGRSGQSARVVVA 11
R+PGN ++ +A G A + RSG R + A
Sbjct: 264 VVSSSRVPGNIAAKKRAESANGGSASSKARSGAPQRAMAA 303
>03_05_0627 - 26240673-26241318,26241713-26242536
Length = 489
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 379 DDVRYEENVWSTQSSRTPISLSMSETSGVHENSKWDPDEDE 257
DD+ YE + W R P++L+ EN +W+ D+D+
Sbjct: 358 DDINYECSTWLFPKGRKPLTLA-------RENFEWNSDDDD 391
>12_01_0773 -
7039294-7039422,7039440-7039479,7039557-7039649,
7039900-7040010,7040091-7040342,7040407-7040903,
7040923-7041777,7041883-7042143,7042183-7042551,
7042637-7042876
Length = 948
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 298 GVHENSKWDPDEDEASRTSRCPSSAHLSRLRSPPGEEGD 182
G +N D DE+ +S + CPS + R + GEEGD
Sbjct: 34 GSSDNDVGDEDEEYSSPSDPCPSPSP-KRRKKGDGEEGD 71
>03_02_0198 + 6344952-6347483
Length = 843
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 499 ESAFQNDVSTFGFNVQSYLIRIEGENCFGNKRPL 600
E F+ +V T G L+R+ G C GNKR L
Sbjct: 550 EKQFRTEVVTLGMIQHVNLVRLRGFCCEGNKRAL 583
>02_04_0311 + 21936812-21937861
Length = 349
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 416 AGSGRGGPDAALR*RQIRGERVVH-PVVPYADLAEH 312
AG+G+G AA R R + V PVVPYA++ +H
Sbjct: 78 AGAGQGQSSAARRRRGLDPAAVAAIPVVPYAEVRKH 113
>06_01_0902 - 6934236-6935546
Length = 436
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 425 VEPAGSGRGGPDAALR*RQIRGERVVHPVVPYADLA 318
VE A + G AA R++RGE VV +PYA +A
Sbjct: 18 VEVAFASSAGSSAAAP-RRLRGELVVRDAIPYAGVA 52
>12_01_0788 +
7192937-7192994,7193074-7193160,7193242-7193307,
7193447-7193555,7194522-7194785,7194919-7195006,
7195085-7195708,7196017-7196140,7196195-7196337,
7196434-7196649,7196781-7196873,7196952-7197032,
7197120-7197504,7197599-7197636
Length = 791
Score = 28.3 bits (60), Expect = 6.4
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Frame = -3
Query: 367 YEENVWSTQSSRTPISLSMSETSGVHENSKWD---PDEDEASRTSRCPSSAHLSRLRSPP 197
++ VWS S + + + +E E D D EA+ SR + L+ P
Sbjct: 381 FDPEVWSA-GSESALDIGANEDIAFQEEEGGDIVLDDTFEANTLSRDDVIPEI--LQMAP 437
Query: 196 GEEGDP*WNRDPSDPPDRACCGHHTDRRIPGNQVHRQERR 77
G++ P N PS+ P +++ G + ERR
Sbjct: 438 GQKVRPPRNSQPSNCPQTQHVSTSNSKKVRGKNKSKVERR 477
>07_01_0569 - 4223494-4224261,4224770-4225090
Length = 362
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 154 PPDRACCGHHTDRRIPGNQVHRQERR 77
PPD + G RR+ ++VHRQ R+
Sbjct: 171 PPDDSIPGASKKRRVDAHEVHRQTRK 196
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 494 RGGER-SPRHRPPYGGALADRMRS 426
RGG SP PPYGG A R RS
Sbjct: 266 RGGRGYSPHRSPPYGGGRARRERS 289
>01_06_1367 -
36711738-36711774,36711962-36712686,36713217-36713284,
36714043-36714157
Length = 314
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = -3
Query: 373 VRYEENVWSTQSSRTPISLSMSETSGVHENSKWDPDEDEASRTSRCPSSAHLSRLRS 203
VRY NV+ + + L++ E + ++ + DED++ TS + H ++S
Sbjct: 256 VRYYLNVFLMRRVLSQCRLNLLEIDSDEDETEEEEDEDQSESTSTSQRTQHAQNVKS 312
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,960,521
Number of Sequences: 37544
Number of extensions: 403917
Number of successful extensions: 1485
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -