Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0236
(717 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32103| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_45977| Best HMM Match : MBT (HMM E-Value=0) 31 0.93
SB_16223| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_24622| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-17) 29 2.8
SB_20395| Best HMM Match : Extensin_2 (HMM E-Value=0.019) 29 5.0
SB_1103| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_41022| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_40384| Best HMM Match : Filament (HMM E-Value=0.76) 28 8.7
SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 28 8.7
>SB_32103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 31.5 bits (68), Expect = 0.71
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 220 LSRLRSPPGEEGDP*WNRDPSDPP 149
++R RSP G+E DP W DPP
Sbjct: 54 IARARSPRGQEQDPPWTAPEPDPP 77
>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
Length = 1198
Score = 31.1 bits (67), Expect = 0.93
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 464 PPYGGALADRMRSVEPAGSGRGGPDAALR*RQIRGERVVHPVVPY 330
PPYG ++ +++ V+P GRG P A + + +G + +VPY
Sbjct: 422 PPYGEPISPKLKGVKPE-RGRGKPKAPM--AEAKGTSLTASMVPY 463
>SB_16223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 519
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 193 LPADCE-VDLDALTTDIDSFETLRPRLDPTLSSRARLTSRTCSARSAYGTTGWTTRSPRI 369
L +CE +++ ++ FE R PT SS+A T + + + W T+SP
Sbjct: 4 LAENCEHIEISGDHSEALIFEG-RSGYSPTKSSKAHQTLKKIEQAKSSTSKDWQTKSP-- 60
Query: 370 *RHLRAASGPPRPLPAGS 423
HLR A+ P P A +
Sbjct: 61 --HLREATMPDSPTDAAA 76
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -3
Query: 208 RSPPGEEGDP*WNRDPSDPPDRACCGHHTDRRIPGNQVHRQERRAAVEGPAFPRGRSG 35
+ PPG+ G+P + P P G + PG+ + E ++GP P G G
Sbjct: 795 QGPPGDPGNPGTDGLPGAPGRDGIDGVRGPKGEPGSDGMKGEAGVGIDGPPGPPGPPG 852
>SB_24622| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-17)
Length = 897
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 582 KTIFTLDPY*ITLYIESKCR 523
KTIFT+D Y IT + SKC+
Sbjct: 429 KTIFTIDAYNITADVSSKCK 448
>SB_20395| Best HMM Match : Extensin_2 (HMM E-Value=0.019)
Length = 348
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 220 LSRLRSPPGEEGDP*WNR-DPSDPPDRA 140
++R RSP G+E DP W DP P RA
Sbjct: 125 IARARSPRGQEQDPPWTAPDPDFPVYRA 152
>SB_1103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = -2
Query: 539 LNPNVDTSFWKALSRRGGERSPRHRPPYGGALADRMRSVEPAGSGRGGPDA 387
L V +W +SRR + PR +PP G R P GS R DA
Sbjct: 46 LQLRVTPEYWYCISRRQKGQKPRGKPPRG-----RRNHCRPWGSRRNIRDA 91
>SB_41022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -3
Query: 253 SRTSRCPSSAHLSRLRSPPGEEGDP*WNRDPSDPPDRACCGHHTDRRIPGNQ 98
SR CPS + PP E NR+P +PP H T GN+
Sbjct: 298 SRNQFCPSGKCEPPVPDPPPSETRE-CNRNPCNPPTTLGTDHTTPSNTTGNR 348
>SB_40384| Best HMM Match : Filament (HMM E-Value=0.76)
Length = 563
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 337 TTGWTTRSPRI*RHLRAASGPPRPLPAGST 426
T G+++ SP I RH+ P PL GST
Sbjct: 430 TRGYSSPSPDIGRHIYRKKEPTTPLTKGST 459
>SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +1
Query: 121 LYDDHNRRDQADLTDLYSITDLLPLPADCEVDLDALTTDIDSF 249
L D+N+ + + Y + ++P P LD + TD+ +F
Sbjct: 115 LLGDYNKLGMTRIKNAYGVKQIVPFPTRGNNKLDLVFTDLSAF 157
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = -3
Query: 196 GEEGDP*WNRDPSDPPDRACCGHHTDRRIPGNQVHRQERRAAVEGPAFPRGRSGQSA 26
GEEG P N P P R G R +PGN Q R + G GR + +
Sbjct: 95 GEEGPPGPNGAPGRPGVRGPKGESGSRGLPGNH-GVQGERGSQGGRGIKGGRGNEGS 150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,039,852
Number of Sequences: 59808
Number of extensions: 416270
Number of successful extensions: 1334
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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