Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0236
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p...    30   1.9  
AF047661-2|AAK71389.1|  886|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF047661-1|AAK71388.2|  915|Caenorhabditis elegans Hypothetical ...    29   2.5  
U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z81517-5|CAB04212.1|  685|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear fa...    28   7.7  
AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical
           protein C47E8.8 protein.
          Length = 1675

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 361 ENVWSTQSSRTPISLSMSETS-GVHENSKWDPDEDEASRTSRCPSSAHLSRLRS 203
           E  WST  S +   L    TS    ++S+WD  E++  R     SS H  R R+
Sbjct: 613 ERKWSTTHSGSMGELQRPVTSQSSRKSSRWDVTEEDLKRKLSATSSTHNPRERA 666


>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
           protein C47E8.8 protein.
          Length = 1675

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 361 ENVWSTQSSRTPISLSMSETS-GVHENSKWDPDEDEASRTSRCPSSAHLSRLRS 203
           E  WST  S +   L    TS    ++S+WD  E++  R     SS H  R R+
Sbjct: 613 ERKWSTTHSGSMGELQRPVTSQSSRKSSRWDVTEEDLKRKLSATSSTHNPRERA 666


>AF047661-2|AAK71389.1|  886|Caenorhabditis elegans Hypothetical
           protein M70.3b protein.
          Length = 886

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +1

Query: 148 QADLTDLYSITDLLPLPADCEVDLDALTTDIDSFETL 258
           QADL  + +I DLLPLP   +  LD L + + S E L
Sbjct: 684 QADLK-ISAIDDLLPLPISQKPKLDELKSSLQSVEPL 719


>AF047661-1|AAK71388.2|  915|Caenorhabditis elegans Hypothetical
           protein M70.3a protein.
          Length = 915

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +1

Query: 148 QADLTDLYSITDLLPLPADCEVDLDALTTDIDSFETL 258
           QADL  + +I DLLPLP   +  LD L + + S E L
Sbjct: 713 QADLK-ISAIDDLLPLPISQKPKLDELKSSLQSVEPL 748


>U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical
           protein K03C7.1 protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
 Frame = -3

Query: 274 DPDEDEASRTSRCPSSAHLSRLRSPP-------GEEGDP*WNRDPSDPPD 146
           DPDE EA  T   P       L  PP        ++  P W  DP +P +
Sbjct: 150 DPDEPEADFTMPAPKKPDTEDLADPPEPPKPAAPKKWKPPWEEDPDEPEE 199


>Z81517-5|CAB04212.1|  685|Caenorhabditis elegans Hypothetical
           protein F28B1.5 protein.
          Length = 685

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 136 NRRDQADLTDLYSITDLLPLPADCEVDLDALTTDIDSF 249
           +R   A L D  +    + + A CEV +DA + +ID F
Sbjct: 106 SRNSSAYLKDRATFRPTVTVSASCEVQVDASSIEIDDF 143


>U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform a protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 322 SLSMSETSGVHENSKWDPDEDEASRTSRCPSSAHLSRLRSPPGEEGDP 179
           S S S T+G   ++   P + +A +T   PSS   ++  SP  E+  P
Sbjct: 11  SASGSTTTGATASTSEAPQDSQAQQTMPPPSSDWSNQFNSPEAEDMGP 58


>AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical
           protein F58D5.1 protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 491 GGERSPRHRPPYGGALADRMRSVEPAGSGRGGP 393
           GG    R  PP  G +A+R    +  G GRGGP
Sbjct: 559 GGGGGFRGGPPGRGGMANRRGRGKRPGDGRGGP 591


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,310,517
Number of Sequences: 27780
Number of extensions: 300320
Number of successful extensions: 1130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)