Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0236
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.7  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 577 NFHPRSLLNNF 545
           NFHPR  +NN+
Sbjct: 151 NFHPRCAVNNY 161


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 631  LNIENKKNATGAVVCFQNNFHPRSLLNNF 545
            +N+ ++  +TG V C Q     R +L  F
Sbjct: 922  VNVASRMESTGKVGCIQVTDETRKILEPF 950


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 376 DVRYEENVWSTQSSRTPIS 320
           D+R EE +W+  +   PIS
Sbjct: 429 DIRTEELIWARGTKDIPIS 447


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 376 DVRYEENVWSTQSSRTPIS 320
           D+R EE +W+  +   PIS
Sbjct: 519 DIRTEELIWARGTKDIPIS 537


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,022
Number of Sequences: 438
Number of extensions: 3768
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)