Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0235
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   3.0  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    26   5.2  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   6.9  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    26   6.9  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   9.1  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   9.1  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   9.1  

>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 112 SPLSASISQANSPPSLLFLTYFPFSITDLASS 17
           +P+ +S+SQAN+P + L     P S+ +L S+
Sbjct: 515 NPIVSSVSQANAPKNALHSMPSPTSLANLPSN 546


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 508 SPSLRASRTAFSNSRSPLKNAFNPTVIGCPAKTTSPL 618
           S S R+S +++ NS      AFN  ++    K+TSP+
Sbjct: 580 SHSERSSHSSYHNSSHVPTAAFNSPIMRTSTKSTSPI 616


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +1

Query: 457 SASLIQFLPATLHPHHHSPSLRASRTAFSNSRSPLKNAFNPTVIGCPAKTTSP 615
           +AS  Q+ PA    + ++ S++ +  A++ S SP  +  NP  +  P K+TSP
Sbjct: 83  NASNAQYYPAYSVINGNN-SVQVASPAYTVSHSP-HSFSNPRYVAVPQKSTSP 133


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 463 SLIQFLPATLHPHHHSPSLRASRTAFSNSRSPLKNAFN 576
           SL+   PAT    H+ P+ + S + F +S  P   AFN
Sbjct: 212 SLVAGTPATDDFSHNKPNNQISISTFYSSLDPYFRAFN 249


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 136 PIFIAFRISPLSASISQANSPPSL 65
           P F A +  PL + +SQ+N PP L
Sbjct: 266 PSFAAPQAHPLPSHLSQSNVPPQL 289


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 142 PKPIFIAFRISPLSASISQANSPPSLLFLTYFPFSIT 32
           PKP+F A ++ PL+   +     P     T FP++ T
Sbjct: 170 PKPLFSALQVYPLATIFNCVAGLPQGFESTVFPWNKT 206


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -1

Query: 467 REAENPAQWRTIGEAYVYQW 408
           +E ++P +WR++G+A +  W
Sbjct: 662 QELDDPLKWRSLGDAALNAW 681


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,652
Number of Sequences: 5004
Number of extensions: 54135
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)