Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0235
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0170 + 27178952-27179572,27181631-27181816,27182245-271822...    30   1.8  
10_08_0975 - 21978642-21979520                                         28   7.2  
04_04_1492 - 33974804-33975040,33975121-33975214,33975351-339757...    28   7.2  

>01_06_0170 +
           27178952-27179572,27181631-27181816,27182245-27182274,
           27183323-27183518,27183623-27183714,27183753-27183773,
           27184216-27184248
          Length = 392

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -2

Query: 196 IPISYSNPNQTS*P*AEFPKPIFIAFRISPLSASISQANSPPS 68
           +P++  +P  TS P    PKP  ++F + P SAS+S + S P+
Sbjct: 10  LPLAGLSPATTSFP-GSTPKPGSLSFALRPPSASLSSSASAPA 51


>10_08_0975 - 21978642-21979520
          Length = 292

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 499 HHHSPSLRASRTAFSNSRSP 558
           HHHS S RAS + F+ S SP
Sbjct: 42  HHHSSSSRASSSLFARSVSP 61


>04_04_1492 -
           33974804-33975040,33975121-33975214,33975351-33975754,
           33975855-33976747,33977014-33977167
          Length = 593

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 425 PLQLFATEQDFRLLSSSSCQPPCTPIITHR 514
           PL +FA    F L+ SSS  PP  P   HR
Sbjct: 7   PLSVFAIAVHFCLVFSSSSSPPVCPANGHR 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,122,436
Number of Sequences: 37544
Number of extensions: 343336
Number of successful extensions: 917
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)