Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0235
(773 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_52869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_37613| Best HMM Match : zf-B_box (HMM E-Value=2.7e-07) 28 7.3
SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_49557| Best HMM Match : RVT_1 (HMM E-Value=0.58) 28 9.6
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_26530| Best HMM Match : RVT_1 (HMM E-Value=0.58) 28 9.6
SB_23124| Best HMM Match : AT_hook (HMM E-Value=3.3) 28 9.6
SB_23084| Best HMM Match : AT_hook (HMM E-Value=3.3) 28 9.6
SB_16102| Best HMM Match : RVT_1 (HMM E-Value=0.00065) 28 9.6
SB_2120| Best HMM Match : AT_hook (HMM E-Value=3.3) 28 9.6
SB_1327| Best HMM Match : AT_hook (HMM E-Value=3.3) 28 9.6
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 32.3 bits (70), Expect = 0.45
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 9 VTYDDARSVIEKGKYVRNNKLGGLFAWEIDADN 107
V YDD SV EK Y++ L G W +D D+
Sbjct: 325 VGYDDVTSVQEKVNYIKKKSLLGAMFWAMDLDD 357
>SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 490 LHPHHHSPSLRASRTAFSNSRSPL-----KNAFNPTVIGCPAKTTSPLI*CIQRANCIFW 654
LHP H+ S + R+A N+ S + ++ ++ V+ T + +I AN FW
Sbjct: 320 LHPERHTKSTDSDRSADDNTTSNVFSLTARSRYDGDVV-TDKSTATHII-----ANSKFW 373
Query: 655 F*SYYY 672
F +YYY
Sbjct: 374 FSNYYY 379
>SB_52869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 563 LSGDRELENAVRDALRLGE**WGCR 489
L ELE V+D LR GE WGC+
Sbjct: 444 LEASLELELGVKDKLRGGEQIWGCK 468
>SB_37613| Best HMM Match : zf-B_box (HMM E-Value=2.7e-07)
Length = 533
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 563 LSGDRELENAVRDALRLGE**WGCR 489
L ELE V+D LR GE WGC+
Sbjct: 429 LEASLELELGVKDKLRGGEQIWGCK 453
>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 475 FLPATLHPHHHSPSLRASRTAFSNSRSP 558
FLP P HS + R SR + S SR P
Sbjct: 478 FLPEQPRPRSHSQTSRRSRASTSESRKP 505
>SB_49557| Best HMM Match : RVT_1 (HMM E-Value=0.58)
Length = 404
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 618 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAGRP 520
+W G F R D+R K++L G R GRP
Sbjct: 308 RWLGHFCRMDDDRVPKQLLFSELEHGSRPVGRP 340
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 439 RH*AGFSASLIQFLPATLHPHHHSPSLRAS 528
RH + S S + HPHHH P+L +S
Sbjct: 468 RHSSSQSPSCNAIITVIHHPHHHHPALPSS 497
>SB_26530| Best HMM Match : RVT_1 (HMM E-Value=0.58)
Length = 359
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 618 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAGRP 520
+W G F R D+R K++L G R GRP
Sbjct: 308 RWLGHFCRMDDDRVPKQLLFSELEHGSRPVGRP 340
>SB_23124| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 203
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 618 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAGRP 520
+W G F R D+R K++L G R GRP
Sbjct: 107 RWLGHFCRMDDDRVPKQLLFSELEHGSRPVGRP 139
>SB_23084| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 249
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 618 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAGRP 520
+W G F R D+R K++L G R GRP
Sbjct: 153 RWLGHFCRMDDDRVPKQLLFSELEHGSRPVGRP 185
>SB_16102| Best HMM Match : RVT_1 (HMM E-Value=0.00065)
Length = 435
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 618 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAGRP 520
+W G F R D+R K++L G R GRP
Sbjct: 339 RWLGHFCRMDDDRVPKQLLFSELEHGSRPVGRP 371
>SB_2120| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 235
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 618 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAGRP 520
+W G F R D+R K++L G R GRP
Sbjct: 185 RWLGHFCRMDDDRVPKQLLFSELEHGSRPVGRP 217
>SB_1327| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 203
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 618 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAGRP 520
+W G F R D+R K++L G R GRP
Sbjct: 107 RWLGHFCRMDDDRVPKQLLFSELEHGSRPVGRP 139
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,353,782
Number of Sequences: 59808
Number of extensions: 405382
Number of successful extensions: 1112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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