Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0235
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                29   0.048
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    24   1.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    24   1.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 29.1 bits (62), Expect = 0.048
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 442 H*AGFSASLIQFLPATLHPHHHSPS 516
           H  G   S   FLP + HPH H PS
Sbjct: 300 HSPGVYPSTAGFLPPSYHPHQHHPS 324


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 700 YNHIFRLPYNNNMIRTKKYNSRAVY 626
           +N+ ++  YNNN      YN +  Y
Sbjct: 90  HNNNYKYNYNNNNYNNNNYNKKLYY 114


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 700 YNHIFRLPYNNNMIRTKKYNSRAVY 626
           +N+ ++  YNNN      YN +  Y
Sbjct: 90  HNNNYKYNYNNNNYNNNNYNKKLYY 114


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -2

Query: 676 YNNNMIRTKKYNSRAVYIKSM 614
           YNNN + TKK+N++   ++++
Sbjct: 374 YNNNDLDTKKWNNKISALRAL 394


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 127 IAFRISPLSASISQAN 80
           +A R +PL  SISQAN
Sbjct: 146 LASRTNPLDDSISQAN 161


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 127 IAFRISPLSASISQAN 80
           +A R +PL  SISQAN
Sbjct: 141 LASRTNPLDDSISQAN 156


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 137  LRKFRLGLACLIWIRITDRN 196
            L+K +LGL   +W R + +N
Sbjct: 1894 LKKLKLGLRSSLWSRPSTQN 1913


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 137  LRKFRLGLACLIWIRITDRN 196
            L+K +LGL   +W R + +N
Sbjct: 1890 LKKLKLGLRSSLWSRPSTQN 1909


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,873
Number of Sequences: 438
Number of extensions: 3966
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)