Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0234
         (766 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   2.0  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   3.5  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   6.2  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   6.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   6.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.2  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 396 FRKDEQGKFLWPGFGE 443
           F +++ GK +W GFG+
Sbjct: 276 FFEEKNGKVVWEGFGD 291


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 623 DKYFKEEVGEDLPNEMWDELNKFRKTYKAK 712
           DK   E+VGED   +   E  K +KT K K
Sbjct: 243 DKPKIEDVGEDEDEDTKKEDKKKKKTIKEK 272


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 157 RRPAGVPLVVESRDWQHGVF 216
           ++ A  P+  E  DW +G+F
Sbjct: 87  KQQANPPISTEHCDWLYGIF 106


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 496 WQGSPSQRRKIQSKTREFSPKPGQ 425
           W   PS      SK  + +PKPGQ
Sbjct: 412 WARPPSTPSADGSKPVQTTPKPGQ 435



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 86  SVP**TVSGRARRVCRYPPSCRAADG 163
           SVP  T+S   R     PPS  +ADG
Sbjct: 398 SVPEPTISTTPRPEWARPPSTPSADG 423


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 391 TGSVKTNRVSSSGPVSA 441
           T +V +N +SSSGP S+
Sbjct: 74  TNNVPSNGLSSSGPFSS 90


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 554 LGFPYSEHRLSVCTPGSLGVAG 489
           L   + +  L+ CTP   GVAG
Sbjct: 89  LALIFEKCELATCTPREPGVAG 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,364
Number of Sequences: 336
Number of extensions: 4290
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)