Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0234
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    29   0.55 
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    29   0.96 
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    27   2.9  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    27   2.9  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    27   2.9  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.9  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   3.9  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.1  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    26   5.1  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   6.8  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    26   6.8  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   9.0  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   9.0  

>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 587  PKDFWLHEADAIDKYFKEEVGEDLPNEMWDE 679
            PK+ WLH+ DA +  +  +V +D+  EM +E
Sbjct: 1187 PKELWLHDLDAFEHAW-NKVMDDIQREMLEE 1216


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
 Frame = -3

Query: 362 SRLRHRQPVLQVVAEVIAEERTHRKRIXXXXXXXXXXXXXASDLMEAPMNTPCCQSRDST 183
           SR  ++  +L    E I   ++  K++              + +++A +  P   +  S 
Sbjct: 476 SRKLNKATILSKATEYIKSLQSKNKKLIEENKILQKRLSEYTSVIQASLTAPSQPASLSL 535

Query: 182 TS---GTPAGR-LPPC-RMADIGTPSELSHSPSIMGHCSAGVQNLEF 57
                 TP  R +PP  + + IGTPS+ ++ P    +C +  QN  +
Sbjct: 536 LGPPGNTPGHRNVPPILKRSSIGTPSQQAYFPDAPHNCHSVPQNSSY 582


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 106 EWESSEGVPISAILQGGRRPAGV 174
           +WE++  +P+S +L GG  P  V
Sbjct: 698 DWEAASFIPVSYVLAGGLTPKNV 720


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 601  PKVFRYAEQLVHVDSA*VFRIQSTGSRYVP-QGVSAWQGSPSQRRKIQSKTRE 446
            PK F +   L+   S      Q   S Y P   VSA+ G P++R KI+SK ++
Sbjct: 1414 PK-FAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSAYVGPPAERAKIRSKMKK 1465


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 711 LALYVFLNLFSSSHISLGRSSPTSSLKYLSMASASCSQKS-LGMLNSLFMSTA 556
           L LY   N  +SS ISL  + PT   K+    ++S S    L   N  FM+ A
Sbjct: 225 LKLYTNSNTVTSSRISLKHTDPTKWQKHAKRTASSNSLTDLLHASNQTFMAPA 277


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 507 ESRRGRAPHRSDVRSSLRPESSRRNRARGTY 415
           E RR  A HR ++  + RP     N +R  Y
Sbjct: 223 EQRRRLAAHRKELHEANRPRGGLNNSSRSAY 253


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 614  DAIDKYFKEEVGEDLPNEMWDELNKFRKTY 703
            DA+DK +  EV ++LPN +   L +F K +
Sbjct: 1207 DALDKTYMTEVIQNLPNGLDTPLLEFSKNF 1236


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 379 SSMSTGSVKTN--RVSSSGPVSARTLGS*TGSYVAAMGSPATPRLPGVH 519
           SS+ T SV T+  + SSS  VSA+++           G+PA P+LP  H
Sbjct: 391 SSLETPSVLTSSYKPSSSSKVSAKSVSR------KPTGAPAIPKLPPKH 433


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 430 GQRNLPCSSLRNQLTWKILGILRPGCGIDSQCF 332
           GQR L C+    ++   +LGI  P CG   + F
Sbjct: 257 GQRQLRCTGAAVKIASDLLGIAFPKCGSRIELF 289


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = +3

Query: 213  VHGSFHEVRGHGRREHSGXMVMHDPFAMRPFFGYNFGDYLKHWLSMPQPGRKMPKIFH 386
            +  +F E + +   ++S  +  ++   +   FG    D  + W S+ +PG  +P  FH
Sbjct: 1138 IKAAFPESQSNANLKNSRGIYYNEHDLVTDIFGNQNLDTDRPWQSLDKPGAFIPSKFH 1195


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -2

Query: 654 SSPTSSLKYLSMASASCSQKSLGMLNSLFMSTALRFSVFRAPALGMYPRES 502
           SSPTS     S AS+  S  SLG   +   S+  + S+ R PA   +  +S
Sbjct: 295 SSPTSESALNSPASSVSSLPSLGASQTTDSSSLNQSSLLRRPANTYFSAQS 345


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 708 ALYVFLNLFSSSHISLGRSSPTSSLKYLSMASASCSQKS 592
           ALY+++  F      L R S    L Y SMA A+   KS
Sbjct: 356 ALYLYIGCFHMHTQVLNRMSSALPLLYWSMAHATLYAKS 394


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 600 QKSLGMLNSLFMSTALRFSVFRAPA 526
           QKS  MLNSL  S +L+ SV R P+
Sbjct: 129 QKSHPMLNSLGSSLSLKKSVSRPPS 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,162
Number of Sequences: 5004
Number of extensions: 72916
Number of successful extensions: 281
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)