Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0234
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0333 - 33204345-33204803                                         31   1.0  
05_05_0349 - 24282924-24283493                                         31   1.3  
05_03_0082 + 8252844-8253035,8253517-8253792,8253905-8254057           30   2.3  
03_06_0080 - 31512792-31513046,31514087-31514202,31514797-315149...    30   2.3  
03_05_0085 - 20638769-20639150,20640054-20640286                       30   2.3  
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458...    26   2.6  
09_02_0112 - 4396756-4397406,4397514-4397717                           28   7.1  
11_01_0150 + 1256029-1256137,1256206-1256247,1256345-1256455,125...    28   9.4  

>03_06_0333 - 33204345-33204803
          Length = 152

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = +1

Query: 346 RCRSRDARCPRSSMSTGSVKTNRVSSSGPVSARTLGS*TGSYVAAMGSPATPRLP 510
           R + R AR PR + S  +    R   S P +A      T +  AA  SPA+PR P
Sbjct: 82  RAQHRGAR-PRWAASPPAATQRRRRHSRPAAALAFSRVTAAAAAASSSPASPRQP 135


>05_05_0349 - 24282924-24283493
          Length = 189

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 252 GGRGLGPHGSSHEHAVLPVPRLDYERYAGRP 160
           GG G+G HG  H HA L  P+L +  +  RP
Sbjct: 84  GGGGVGGHGHGHSHAQL--PQLHHRMHPPRP 112


>05_03_0082 + 8252844-8253035,8253517-8253792,8253905-8254057
          Length = 206

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 210 AVLPVPRLDYERYAGRPSAALQDGGYRHTLRALPLTVYHGTLLCR 76
           A+LP+PR+ Y ++A    A   +GG    ++ L  T    TLLCR
Sbjct: 133 AILPMPRVPYPKHAIGDDAIEGNGG-NSLIKPLRSTRQCSTLLCR 176


>03_06_0080 -
           31512792-31513046,31514087-31514202,31514797-31514911,
           31514997-31515056,31515619-31515688,31515952-31515986,
           31516094-31516231,31516369-31516737
          Length = 385

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 19  PWDPSKKTPAAHPNSRFCTPAEQCP--MIDGEWESSEGVPISAILQGGRRPAGVPLV 183
           PW  ++ TP +H + +F  P E C   ++D +W  SE   I   ++      G  LV
Sbjct: 149 PW--TQPTPCSHVDLKFPVPPEHCTSGIMDNKWRRSEYDTIGTCVKAAVVYLGTALV 203


>03_05_0085 - 20638769-20639150,20640054-20640286
          Length = 204

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 508 GVSAWQGSPSQRRKIQSKTREFSPKPGQRNLPCSSL 401
           G  +W GS   RRK+       SP P +R+L   SL
Sbjct: 47  GGGSWSGSDRWRRKVPVTAGPASPSPARRSLRLKSL 82


>11_01_0574 +
           4582098-4582331,4582450-4582492,4582683-4582757,
           4584344-4584465,4584547-4584654,4585975-4586119,
           4586786-4586869,4586997-4587345,4587527-4587666,
           4587784-4588037,4588409-4588576,4588686-4588976,
           4589329-4589538,4589778-4589860,4590288-4590414,
           4593624-4595516,4596274-4596395,4596487-4596628,
           4596719-4596940,4597489-4597563,4598351-4598452,
           4598616-4598819
          Length = 1730

 Score = 26.2 bits (55), Expect(2) = 2.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 622 RQVLQRGGRRRSTQRNVGRTEQVQEN 699
           R+ L   G+   T  N+GRTE++Q++
Sbjct: 697 RRRLSEFGKANDTSGNIGRTEELQDS 722



 Score = 21.8 bits (44), Expect(2) = 2.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 499 PRLPGVHTESRCSEYGK 549
           P  PGV    R SE+GK
Sbjct: 689 PNDPGVSKRRRLSEFGK 705


>09_02_0112 - 4396756-4397406,4397514-4397717
          Length = 284

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
 Frame = +1

Query: 1   VDWKGQPWDPSKKTPAAHPNSRFCTPAEQCPMIDGEWESSEGVP-ISAI----LQGGRRP 165
           V+  G    P ++ PAAH  +    P  +  ++DG+ +  E  P ++ I    L G    
Sbjct: 161 VELDGDVPRPRQRAPAAHAVAVRGDPGARAVVVDGDADGLEAQPAVAGIIRLGLAGEECG 220

Query: 166 AGVPLVVESRDWQHGVFMGASMRSE 240
           A  P V E R  + GV  G  +  E
Sbjct: 221 ADNPAVEERRRVEPGVAAGDGVADE 245


>11_01_0150 +
           1256029-1256137,1256206-1256247,1256345-1256455,
           1256538-1256600,1256678-1256910,1256999-1257223,
           1257319-1257411,1257493-1257591,1257840-1257956
          Length = 363

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = +1

Query: 619 HRQVLQRGGRRRSTQRNVGRTEQ-----VQENIQGQALN*TL 729
           H  +L    RRRSTQ N+  TEQ     V E +Q Q+LN TL
Sbjct: 66  HNSILT-AKRRRSTQPNLQDTEQDTEQDVIERVQVQSLNGTL 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,632,601
Number of Sequences: 37544
Number of extensions: 592100
Number of successful extensions: 2013
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2012
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)