Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0234
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    27   0.25 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.77 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   4.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.5  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   9.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = +3

Query: 270 MVMHDPFAMRPFFGY--NFGDYLKHWLSMPQPGRKMPKIFHVNWFRKDEQGKFLWPG--F 437
           ++M+  F +  + G   N  +YL H  +    GR   K      FR D    +L PG  F
Sbjct: 413 IIMYIAFIILQYAGLLRNRSEYLNHLRANVAEGRNQRKNVLDRLFRMDRDAVYLQPGMSF 472

Query: 438 GE 443
           GE
Sbjct: 473 GE 474


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 681 SSSHISLGRSSPTSSLKYLSMASASCSQKS 592
           SS ++ +G +SP SS +YLS A+ S +  S
Sbjct: 813 SSDYLMVG-NSPASSPRYLSAAATSSTSTS 841


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 396 FRKDEQGKFLWPGFGE 443
           F +++ G+ LW GFG+
Sbjct: 257 FFEEKDGQVLWEGFGD 272


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 396 FRKDEQGKFLWPGFGE 443
           F +++ G+ LW GFG+
Sbjct: 257 FFEEKDGQVLWEGFGD 272


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 145 GWRISAHPPSSP 110
           GW +  HPP SP
Sbjct: 263 GWDVLPHPPYSP 274


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 742 LGRERESNLKLGLVCFPELVQFVPHFV 662
           L +ER+++  LG++    +V ++P FV
Sbjct: 364 LAKERKASTTLGIIMSAFIVCWLPFFV 390


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 479 RWGALPRRDSLGYI 520
           +WG LP +DSL ++
Sbjct: 292 QWGFLPSKDSLVFV 305


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +1

Query: 112 ESSEGVPISAILQGGRRPAGVPLVVESRDWQHGVFMGAS 228
           E + GVP S  +   ++  G PL+    DW    +   S
Sbjct: 87  ERNNGVPSSLNVVTNKKGKGGPLLRPYPDWSFAKYEDCS 125


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 255 RGGRGLGPHGSSHEHAVL 202
           +GG+GLG  G+     VL
Sbjct: 6   KGGKGLGKGGAKRHRKVL 23


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 51  TSKFQILHPGRAV 89
           +  FQILH GRA+
Sbjct: 193 SESFQILHAGRAL 205


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 51  TSKFQILHPGRAV 89
           +  FQILH GRA+
Sbjct: 193 SESFQILHAGRAL 205


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 394 QLTWKILGILRPGCGIDSQCF 332
           ++ W   GI R  C ID + F
Sbjct: 118 EVVWLSHGIFRSSCDIDVEFF 138


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 51  TSKFQILHPGRAV 89
           +  FQILH GRA+
Sbjct: 193 SESFQILHAGRAL 205


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 137 DIGTPSELSHSPSIMGHCSAGVQNLEF 57
           +IGT   ++H  S +    +GVQ + F
Sbjct: 44  NIGTIGHVAHGKSTIVKAISGVQTVRF 70


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 511  QGVSAWQGSPSQRRKIQSKTREFSPKPGQR 422
            +G SA  G P   R  +  T + SP P  R
Sbjct: 1355 RGPSASGGRPVPERPERVPTVDLSPSPSDR 1384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,540
Number of Sequences: 438
Number of extensions: 5196
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)