Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0234
(766 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17670.1 68418.m02071 expressed protein 32 0.36
At5g29090.1 68418.m03619 hypothetical protein 32 0.48
At5g34855.1 68418.m04092 hypothetical protein 29 2.6
At3g50750.1 68416.m05554 brassinosteroid signalling positive reg... 29 4.5
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 28 5.9
At4g26900.1 68417.m03870 imidazole glycerol phosphate synthase h... 28 5.9
At3g50330.1 68416.m05504 basic helix-loop-helix (bHLH) family pr... 28 5.9
At5g57870.2 68418.m07239 eukaryotic translation initiation facto... 28 7.8
At5g57870.1 68418.m07238 eukaryotic translation initiation facto... 28 7.8
At5g44640.1 68418.m05470 glycosyl hydrolase family 1 protein con... 28 7.8
At5g42260.1 68418.m05144 glycosyl hydrolase family 1 protein con... 28 7.8
At5g36890.1 68418.m04419 glycosyl hydrolase family 1 protein pco... 28 7.8
At4g39920.1 68417.m05654 tubulin folding cofactor C / Porcino (P... 28 7.8
At4g00450.1 68417.m00062 expressed protein 28 7.8
At2g44450.1 68415.m05527 glycosyl hydrolase family 1 protein con... 28 7.8
At2g01210.1 68415.m00033 leucine-rich repeat transmembrane prote... 28 7.8
>At5g17670.1 68418.m02071 expressed protein
Length = 309
Score = 32.3 bits (70), Expect = 0.36
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = +3
Query: 261 SGXMVMHDPFAMRPFFGYNFGDYLKHWLSMPQPG--RKMPKIFHVNWFRKDEQ--GKFLW 428
S V + P + P G N GDY K +++ + G + + ++WFR W
Sbjct: 26 SAGNVKYRPAVILPGLGNNTGDYKKLEVTLGEYGVPAVVAAVSRLDWFRNAAGLVDPAYW 85
Query: 429 PGFGENSRVLDWILRRCD 482
G VLDW L R D
Sbjct: 86 RGTLRPRPVLDWYLNRID 103
>At5g29090.1 68418.m03619 hypothetical protein
Length = 195
Score = 31.9 bits (69), Expect = 0.48
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 426 WPGFGENSRVLDWILRRCDGEPCH 497
W G+ N RVLD + RCDG+ H
Sbjct: 54 WSGWASNVRVLDGVAGRCDGQNGH 77
>At5g34855.1 68418.m04092 hypothetical protein
Length = 425
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Frame = -1
Query: 130 AHPPSSPTHRLSW----DTALPGCRIWNLDVQPEFS 35
A P P HR W + +P R+W DV EF+
Sbjct: 42 AAAPQPPVHRFPWPKLPNERIPSQRVWEKDVNKEFT 77
>At3g50750.1 68416.m05554 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 276
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = -1
Query: 142 WRISAHP---PSSPTHRLSWDTALPGCRIWNLDVQPEFSC-WG 26
W+ S P PSSPT RL T++P C DV SC WG
Sbjct: 175 WQSSNFPVSAPSSPTRRLHHYTSIPECD--ESDVSTVDSCRWG 215
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 216 HGSFHEVRGHGRREHSGXMVMHDPFAMRPFFGYNFGDYLKHW 341
HG + GHG+ +H H F FG + G + K W
Sbjct: 133 HGYGYGYHGHGKFKHG--KFKHGKFGKHGMFGKHKGKFFKKW 172
>At4g26900.1 68417.m03870 imidazole glycerol phosphate synthase
hisHF, chloroplast / IGP synthase / ImGPP synthase /
IGPS identical to SP|Q9SZ30 Imidazole glycerol phosphate
synthase hisHF, chloroplast precursor (IGP synthase)
{Arabidopsis thaliana}
Length = 592
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -2
Query: 684 FSSSHISLGRSSPTSSLKYLSMASASCSQKSLGMLNSLFMS 562
FSS S S +SS++ S AS SQKS+G +N F S
Sbjct: 8 FSSIVSSRQNFSSSSSIRASSPASLFLSQKSIGNVNRKFKS 48
>At3g50330.1 68416.m05504 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 231
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = -2
Query: 648 PTSSLKYLSMASASCSQKSLGMLNSLFMSTALRFSVFRAPALGMYPRESRRGRAPHRSDV 469
P + +Y S+S +K G ++ M+ A+R +FR + + + P R +V
Sbjct: 65 PGLNFRYAPSPSSSLPEKRGGCSDNANMA-AMREMIFRIAVMQPIHIDPESVKPPKRKNV 123
Query: 468 RSSLRPES--SRRNRARGTYPVRL 403
R S P+S +R R R + +R+
Sbjct: 124 RISKDPQSVAARHRRERISERIRI 147
>At5g57870.2 68418.m07239 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 776
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 388 STGSVKTNRVSSSGPVSARTL--GS*TGSYVAAMGSPATPRLPGV 516
+T +++ VSS GPVS + G G+ G P T R+PG+
Sbjct: 467 ATANMRRGMVSSGGPVSPGPVYPGGRPGAGGLMPGMPGTRRMPGM 511
>At5g57870.1 68418.m07238 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 780
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 388 STGSVKTNRVSSSGPVSARTL--GS*TGSYVAAMGSPATPRLPGV 516
+T +++ VSS GPVS + G G+ G P T R+PG+
Sbjct: 471 ATANMRRGMVSSGGPVSPGPVYPGGRPGAGGLMPGMPGTRRMPGM 515
>At5g44640.1 68418.m05470 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to Non-cyanogenic beta-glucosidase precursor
(SP:P26204) [Trifolium repens]
Length = 507
Score = 27.9 bits (59), Expect = 7.8
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 315 NFGDYLKHWLSMPQP 359
NFGD +KHW+++ +P
Sbjct: 187 NFGDRVKHWMTLNEP 201
>At5g42260.1 68418.m05144 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to amygdalin hydrolase isoform AH I precursor
(GI:16757966) [Prunus serotina]
Length = 507
Score = 27.9 bits (59), Expect = 7.8
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 315 NFGDYLKHWLSMPQP 359
NFGD +KHW+++ +P
Sbjct: 187 NFGDRVKHWMTLNEP 201
>At5g36890.1 68418.m04419 glycosyl hydrolase family 1 protein
pcontains Pfam PF00232 : Glycosyl hydrolase family 1
domain; similar to amygdalin hydrolase isoform AH I
precursor (GI:16757966) [Prunus serotina]; prunasin
hydrolase isoform PHA precursor, Prunus serotina,
EMBL:AF221526
Length = 490
Score = 27.9 bits (59), Expect = 7.8
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 315 NFGDYLKHWLSMPQP 359
NFGD +KHW+++ +P
Sbjct: 170 NFGDRVKHWITLNEP 184
>At4g39920.1 68417.m05654 tubulin folding cofactor C / Porcino (POR)
identical to tubulin-folding cofactor C (Porcino; POR)
GI:20514261 from [Arabidopsis thaliana]; identical to
cDNA tubulin folding cofactor C GI:20514260
Length = 345
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 666 SLGRSSPTSSLKYLSMASA-SCSQKSLGMLNSLFMSTALRFSVFRAPALG 520
+L +S SS+ +++ SC K G +N+LF+ + SV+ P +G
Sbjct: 188 TLVKSFEGSSIGEFTLSDLDSCQVKLTGTVNALFLHRLKKCSVYTGPVIG 237
>At4g00450.1 68417.m00062 expressed protein
Length = 2124
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 490 GSPSQRRKIQSKTREFSPKPGQRNLPCS-SLRNQLTWKILGIL 365
GSPS R+ + T + SP P L S SLR Q ++L ++
Sbjct: 1845 GSPSLARRSSANTTDTSPPPSPAALRASMSLRLQFLLRLLPVI 1887
>At2g44450.1 68415.m05527 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to amygdalin hydrolase isoform AH I precursor
(GI:16757966) [Prunus serotina]
Length = 506
Score = 27.9 bits (59), Expect = 7.8
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 315 NFGDYLKHWLSMPQP 359
NFGD +KHW+++ +P
Sbjct: 187 NFGDRVKHWMTLNEP 201
>At2g01210.1 68415.m00033 leucine-rich repeat transmembrane protein
kinase, putative
Length = 716
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 513 PRESRRGRAPHRSDVRSSLRPESSRRNRARGTYPVRLY 400
PR++ G P SSLR + R NR G+ P++L+
Sbjct: 72 PRKNLYGSLPSSLGFLSSLRHLNLRSNRFYGSLPIQLF 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,488,236
Number of Sequences: 28952
Number of extensions: 421866
Number of successful extensions: 1361
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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