Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0232
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.3  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   9.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   9.3  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   9.3  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 9   WARVCRAAPWSSTRRATLPSSRISTSS 89
           W +  + AP  S+  ++LP+ R STS+
Sbjct: 67  WKKSPQGAPSPSSTPSSLPTQRTSTSN 93


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 506 YSYGNTLTNFFAGSGHVFNSSTAISDPVYSTNSSRSFC 393
           Y+  +T+  +   S   FN S++   P Y   +S  FC
Sbjct: 38  YTPSSTIDLYNTSSVSNFNESSSSVFPNYIRTTSMVFC 75


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 506 YSYGNTLTNFFAGSGHVFNSSTAISDPVYSTNSSRSFC 393
           Y+  +T+  +   S   FN S++   P Y   +S  FC
Sbjct: 38  YTPSSTIDLYNTSSVSNFNESSSSVFPNYIRTTSMVFC 75


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 568 PLVSPFCAAGCFRAICFSARG 506
           PLVSPF AA   R   F+  G
Sbjct: 202 PLVSPFLAAMAHRPPHFAFPG 222


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,820
Number of Sequences: 336
Number of extensions: 2183
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)