Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0232
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...   130   2e-31
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    29   0.47 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   0.62 
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    28   1.4  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   3.3  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    26   4.4  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.4  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    26   5.8  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score =  130 bits (314), Expect = 2e-31
 Identities = 57/84 (67%), Positives = 67/84 (79%)
 Frame = +2

Query: 2    DYVGKGLSGGTVVIYPPRDSPFESHLNVIVGNVCLYGATSGRAYFRGIASERFCVRNSSC 181
            DYVGKGLSGG ++IYPPR SPF+   N+I+GNVCLYGATSG A+  G+A+ERF VRNS  
Sbjct: 1386 DYVGKGLSGGRLIIYPPRVSPFKPEENMIIGNVCLYGATSGHAFISGVAAERFAVRNSGA 1445

Query: 182  TAVVEVVGDHACEYMTXGAALVLG 253
             AVVE VGDH CEYMT G  ++LG
Sbjct: 1446 IAVVEGVGDHGCEYMTGGRVVILG 1469



 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 32/76 (42%), Positives = 43/76 (56%)
 Frame = +1

Query: 280  MSGGIAYVYDIDGSFKGKCNPEMVXXXXXXXXXXXKYVQKLLEEFVEYTGSLIAVELLKT 459
            MSGGIAYVYD+   F GK N EMV            +++ L+++   YTGS +A  +L  
Sbjct: 1479 MSGGIAYVYDMQMDFAGKINTEMVDISSVTDAAEIAFLRGLIQDHRHYTGSQVADRILSD 1538

Query: 460  WPEPAKKFVKVFPYEY 507
            +P    +FVKV P EY
Sbjct: 1539 FPRHLSRFVKVLPREY 1554


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 92  GNVCLYGATSGRAYFRGIASERFCVRNSSCTAVVEVV 202
           G +CL GA  G A FRG    R  + N++CT  V ++
Sbjct: 430 GPMCLIGAGVGIAPFRGFVQRR--LANAACTGKVWII 464


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = -3

Query: 204  PTTSTTAVQLELRTQNRSDAMPLK*ARPEVAPYRHTFPTMTLRCDSKGESRGG*MTTVPP 25
            P+TSTTA   +     +   +P++ A P +AP R  FP  +        SR   ++T+PP
Sbjct: 854  PSTSTTAGWNDAPMLGQ---LPMRRAAPSMAPVRSPFPGAS-SAQPAAMSRTSSVSTLPP 909

Query: 24   DRP 16
              P
Sbjct: 910  PPP 912


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +2

Query: 92  GNVCLYGATSGRAYFRGIASERFCVRNSSCTAVVEVVGDHAC 217
           G +CL GA  G A FRG    R  + N++C   V V   H C
Sbjct: 395 GPMCLIGAGVGVAPFRGFVQRR--LTNATCAGKVWVF--HGC 432


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +3

Query: 27  AAPWSSTRRATLPSSRISTSSWGTCVCTEPPRDAPT 134
           AAP++ST  A + SSR ST +  T V   P R  PT
Sbjct: 279 AAPYASTPSAAVGSSRGSTPASAT-VPISPARGFPT 313


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 242 LVLGPPA-GTSRPA*AVASPTSTTLMVHSKGNVILKWL 352
           L+ GPP  G S  A AVA+   +T    S  +++ KW+
Sbjct: 166 LLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWM 203


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -3

Query: 252 PSTSAAPXVMYSHAWSPTTSTTAVQLELRTQNRSDAM 142
           PSTS +P  +YS +  P+  T A  ++++  + ++ +
Sbjct: 212 PSTSNSPDPLYSASQPPSIKTDASPVDIKNMDAAEKL 248


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 100 VSVRSHLGTRLLQGHRVGAVLRAQ 171
           + + SH G+R  +  R+G +LRA+
Sbjct: 633 IQISSHYGSRRQEAQRLGRILRAK 656


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,141
Number of Sequences: 5004
Number of extensions: 36500
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)