Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0232
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0059 + 27402365-27402733,27402848-27402982,27403070-274031... 132 2e-31
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 131 6e-31
07_03_1555 - 27669981-27670148,27670232-27670315,27670349-276703... 101 7e-22
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558... 33 0.21
01_01_0270 - 2225250-2225263,2225549-2225732,2225817-2225972,222... 30 2.0
01_01_0268 - 2214923-2215048,2215131-2215286,2215371-2215469,221... 30 2.0
02_01_0450 + 3234378-3234834,3235118-3235223,3235722-3235920,323... 29 2.6
08_01_0020 + 152855-153325 29 3.4
02_01_0582 + 4315336-4315956,4316060-4316188,4316282-4316581 29 4.5
10_01_0338 + 3717089-3717205,3717725-3718297 28 6.0
04_04_0823 + 28383798-28383864,28384475-28384877,28387388-283879... 28 6.0
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 28 7.9
>05_07_0059 + 27402365-27402733,27402848-27402982,27403070-27403183,
27403297-27403449,27403544-27403644,27403945-27404041,
27404542-27404651,27404775-27404878,27405129-27405308,
27405398-27405741,27405841-27405905,27405981-27406450,
27406939-27407793,27408045-27408116,27408475-27408575,
27409069-27409170,27409295-27409456,27409665-27411230,
27411384-27411602,27413924-27414198,27414291-27414596,
27414727-27415012,27415085-27415087,27415162-27415416,
27415537-27415803
Length = 2236
Score = 132 bits (319), Expect = 2e-31
Identities = 56/84 (66%), Positives = 67/84 (79%)
Frame = +2
Query: 2 DYVGKGLSGGTVVIYPPRDSPFESHLNVIVGNVCLYGATSGRAYFRGIASERFCVRNSSC 181
DYVGKGLSGG +V+YPPR+S F N+++GNV LYGAT G AYF G+A+ERFCVRNS
Sbjct: 1489 DYVGKGLSGGKIVVYPPRNSRFNPQDNIVIGNVALYGATKGEAYFNGMAAERFCVRNSGA 1548
Query: 182 TAVVEVVGDHACEYMTXGAALVLG 253
AVVE +GDH CEYMT G A++LG
Sbjct: 1549 QAVVEGIGDHGCEYMTGGTAVILG 1572
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/76 (35%), Positives = 44/76 (57%)
Frame = +1
Query: 280 MSGGIAYVYDIDGSFKGKCNPEMVXXXXXXXXXXXKYVQKLLEEFVEYTGSLIAVELLKT 459
MSGGIAYVYD+DG F +CN E+V ++ ++++ +T S +A ++L
Sbjct: 1582 MSGGIAYVYDVDGKFSSRCNYELVDLYAVVEEDDITTLRMMIQQHRLHTQSDLARDILLN 1641
Query: 460 WPEPAKKFVKVFPYEY 507
+ KF+KV+P +Y
Sbjct: 1642 FDTLLPKFIKVYPRDY 1657
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 131 bits (316), Expect = 6e-31
Identities = 56/84 (66%), Positives = 66/84 (78%)
Frame = +2
Query: 2 DYVGKGLSGGTVVIYPPRDSPFESHLNVIVGNVCLYGATSGRAYFRGIASERFCVRNSSC 181
DYVGKGLSGG +V+YPPRDS F N+++GNV LYGAT G AYF G+A+ERFCVRNS
Sbjct: 1432 DYVGKGLSGGKIVVYPPRDSTFIPEDNIVIGNVALYGATIGEAYFNGMAAERFCVRNSGA 1491
Query: 182 TAVVEVVGDHACEYMTXGAALVLG 253
AVVE +GDH CEYMT G ++LG
Sbjct: 1492 QAVVEGIGDHGCEYMTGGTVVILG 1515
Score = 65.7 bits (153), Expect = 3e-11
Identities = 32/76 (42%), Positives = 45/76 (59%)
Frame = +1
Query: 280 MSGGIAYVYDIDGSFKGKCNPEMVXXXXXXXXXXXKYVQKLLEEFVEYTGSLIAVELLKT 459
MSGGIAYVYDIDG F +CN E+V ++ ++E+ TGS++A ++L
Sbjct: 1525 MSGGIAYVYDIDGKFSVRCNHELVDLYHVEEEEDITTLKMMIEQHRLNTGSVVARDILSN 1584
Query: 460 WPEPAKKFVKVFPYEY 507
+ KFVKVFP +Y
Sbjct: 1585 FDTLLPKFVKVFPRDY 1600
>07_03_1555 - 27669981-27670148,27670232-27670315,27670349-27670360,
27670683-27670761,27670840-27671078,27671167-27671260,
27671342-27671484,27671688-27671786,27671870-27671998,
27672123-27672197,27672308-27672520,27672581-27672676,
27673282-27673380,27673600-27673839,27674212-27674322,
27674429-27674626,27674720-27674835,27675076-27675193,
27675761-27675866,27675972-27676030,27676259-27676388,
27676730-27676887,27677672-27677887,27677972-27678082,
27678313-27678472,27679364-27679509,27679603-27679695,
27680610-27680706,27681224-27681294,27681407-27681505,
27682037-27682168,27682287-27682729,27683252-27683564,
27684301-27684549
Length = 1631
Score = 101 bits (241), Expect = 7e-22
Identities = 47/84 (55%), Positives = 55/84 (65%)
Frame = +2
Query: 2 DYVGKGLSGGTVVIYPPRDSPFESHLNVIVGNVCLYGATSGRAYFRGIASERFCVRNSSC 181
DYVGKG++GG +V+ P + F IVGN CLYGAT G+ + RG ERF VRNS
Sbjct: 1434 DYVGKGMAGGELVVVPVEKTGFVPEDAAIVGNTCLYGATGGQVFVRGKTGERFAVRNSLG 1493
Query: 182 TAVVEVVGDHACEYMTXGAALVLG 253
AVVE GDH CEYMT G +VLG
Sbjct: 1494 QAVVEGTGDHCCEYMTGGCVVVLG 1517
Score = 34.3 bits (75), Expect = 0.091
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +1
Query: 280 MSGGIAYVYDIDGSFKGKC----NPEMVXXXXXXXXXXXKYVQKLLEEFVEYTGSLIAVE 447
M+GG+AY+ D D + K N E+V ++ L+E +VE TGS
Sbjct: 1527 MTGGLAYILDEDDTLVPKVIVKVNKEIVKMQRVNAPAGQMQLKGLIEAYVEKTGSEKGAT 1586
Query: 448 LLKTWPEPAKKFVKVFP 498
+L+ W F ++ P
Sbjct: 1587 ILREWEAYLPLFWQLVP 1603
>06_01_0747 -
5587261-5587356,5587472-5587855,5588133-5588192,
5588428-5588484,5588663-5588800,5588901-5588966,
5589234-5589452,5589522-5589737,5589813-5589884,
5589952-5590205,5590356-5590525,5590840-5591029,
5592211-5592331,5592838-5592921,5593003-5593365,
5594530-5594724,5594938-5595933,5596329-5596370
Length = 1240
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 142 APEVGASRGGSVQTHVPHDDVEMRLEGRVARRVDDHGAARQTLAHVV 2
A +V ++ + H PHD++E L +R +DD G A+Q +V
Sbjct: 678 ADQVSKAKSSGILEHSPHDEIEGELLHLQSRLLDDVGGAKQRYEDLV 724
>01_01_0270 -
2225250-2225263,2225549-2225732,2225817-2225972,
2226276-2226374,2226489-2226563,2226682-2226750,
2226917-2227115,2227492-2227597,2228118-2228526
Length = 436
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 236 AALVLGPPA-GTSRPA*AVASPTSTTLMVHSKGNVILKWLNSYLWNSKTTSNMYRNFSKN 412
A L+ GPP G S A AVA+ +T S +++ KW+ + K +N+++ +N
Sbjct: 144 AFLLYGPPGTGKSYLAEAVATEVDSTFFSISSSDLVSKWMGE---SEKLVANLFQMAREN 200
Query: 413 S*STL 427
+ S +
Sbjct: 201 APSII 205
>01_01_0268 -
2214923-2215048,2215131-2215286,2215371-2215469,
2215557-2215631,2215732-2215800,2216515-2216713,
2220162-2220267,2221117-2221588
Length = 433
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 236 AALVLGPPA-GTSRPA*AVASPTSTTLMVHSKGNVILKWLNSYLWNSKTTSNMYRNFSKN 412
A L+ GPP G S A AVA+ +T S +++ KW+ + K +N+++ +N
Sbjct: 165 AFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGE---SEKLVANLFQMAREN 221
Query: 413 S*STL 427
+ S +
Sbjct: 222 APSII 226
>02_01_0450 +
3234378-3234834,3235118-3235223,3235722-3235920,
3236119-3236187,3236299-3236373,3236484-3236582,
3236694-3236864,3237394-3237519
Length = 433
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 236 AALVLGPPA-GTSRPA*AVASPTSTTLMVHSKGNVILKWLNSYLWNSKTTSNMYRNFSKN 412
A L+ GPP G S A AVA+ +T S +++ KW+ + K +N+++ +N
Sbjct: 160 AFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLLSKWMGE---SEKLVTNLFQMAREN 216
Query: 413 S*STL 427
+ S +
Sbjct: 217 APSII 221
>08_01_0020 + 152855-153325
Length = 156
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 33 PWSSTRRATLPSSRISTSSWGTCVCTEP 116
PW+ T PS+ ST+ G C C++P
Sbjct: 128 PWTPTSPLAAPSAGYSTAIRGMCSCSKP 155
>02_01_0582 + 4315336-4315956,4316060-4316188,4316282-4316581
Length = 349
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -2
Query: 187 GRAARVAHAEPLRRDAPEVGASRGGSVQTHVPHDDVEMRLEGRVARRVDDHGAA 26
GRAAR+ R++ R S + + + R++GR A+R DDH AA
Sbjct: 280 GRAARLMRYREKRKNRRFEKTIRYASRKAYA---ETRPRVKGRFAKRADDHDAA 330
>10_01_0338 + 3717089-3717205,3717725-3718297
Length = 229
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +3
Query: 519 KQMALKQPAAQKGDTNGHQNGVLDI-EET---VKDVEFEKKNLEKILDK 653
K+ + P ++ +GHQN VLDI +ET + D EK+NL+ +DK
Sbjct: 153 KEPPSQPPIEREPCPSGHQNVVLDICQETTLFLHDASLEKENLQ-AMDK 200
>04_04_0823 +
28383798-28383864,28384475-28384877,28387388-28387932,
28387978-28388594
Length = 543
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -3
Query: 213 AWSPTTSTTAVQLELRTQNRSDA 145
A SPTT+T VQL R + RSDA
Sbjct: 329 ASSPTTATARVQLWCRRRRRSDA 351
>04_03_0659 -
18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 531 LKQPAAQKGDTNGHQNGVLDIEETVKDVEFEKKNLEKILDKTRGFMKY 674
+K KG+ + Q+G +T KDV + K+ IL K + F KY
Sbjct: 236 VKSKDTSKGNKDNGQSGRTISLDTKKDVNLKYKDDRLILGKAKIFSKY 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,892,653
Number of Sequences: 37544
Number of extensions: 290702
Number of successful extensions: 1149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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