Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0232
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22074| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_14648| Best HMM Match : GXGXG (HMM E-Value=5.7e-05)                 42   5e-04
SB_31661| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)                      29   3.5  
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)              29   4.6  
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_22074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 572

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 20/49 (40%), Positives = 33/49 (67%)
 Frame = +3

Query: 534 KQPAAQKGDTNGHQNGVLDIEETVKDVEFEKKNLEKILDKTRGFMKYGR 680
           K+  +     N + + ++DIEE + D E E+K ++++LDKTRGF+KY R
Sbjct: 8   KKERSPSRKNNKNDSPIVDIEEAIPDAEMEQKIIDRVLDKTRGFVKYER 56


>SB_14648| Best HMM Match : GXGXG (HMM E-Value=5.7e-05)
          Length = 138

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 22/70 (31%), Positives = 36/70 (51%)
 Frame = +1

Query: 280 MSGGIAYVYDIDGSFKGKCNPEMVXXXXXXXXXXXKYVQKLLEEFVEYTGSLIAVELLKT 459
           MSGG+A++ D + +FK  CN   V           + ++ LL++ ++ TGS +A  LL  
Sbjct: 70  MSGGMAFILDRERTFKSFCNHGSV-DLEYVTGNDVELLRSLLQDHLKSTGSAVAATLLGN 128

Query: 460 WPEPAKKFVK 489
           W +    F K
Sbjct: 129 WNDSVNLFTK 138



 Score = 34.3 bits (75), Expect = 0.093
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +2

Query: 200 VGDHACEYMTXGAALVLG 253
           VGDH CEYMT G  +VLG
Sbjct: 43  VGDHGCEYMTGGVVVVLG 60


>SB_31661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 175 RVAHAEPLRRDAPEVGASRGGSVQTHVPHDDVEMRLE 65
           ++A  E    + PE   +RG S +   P DDVE++ E
Sbjct: 685 KMASVEDYMEEKPESEGARGASSKGEPPEDDVEVKRE 721


>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
          Length = 969

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 25  GRHRGHLPAARLSLRVASQRHRGERVSVRSHLGTRLLQGH 144
           G  RG+LP +  +   +S+RHR +  +V +    +LL  H
Sbjct: 772 GGERGNLPDSAFTQEASSKRHRSQAPTVYTEATKQLLLSH 811


>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
          Length = 1019

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 32  TVVIYPPRDSPFESHLNVIVGNVCLYGATSGRAYFRGIASER 157
           TV +Y P   PF++  N+IV  +   G  +  AY+ GI+++R
Sbjct: 7   TVQLYQPPGQPFDA--NIIVLWILAVGTVAIGAYWAGISNKR 46


>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 519 KQMALKQPAAQKGDTNGHQNGVLDIEETVKDVEFEKKNLEKILDK 653
           K   LK   + K D    +N  L + ETV  +  EK+ +EK ++K
Sbjct: 465 KDEELKDVESLKKDREDLKNECLALSETVTKIANEKREMEKEIEK 509


>SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 203  GDHACEYMTXGAALVLGPPAGTSRP-A*AVASPTSTTLMVHSK 328
            G   C+Y+  G+  VL PP  TS P + A+      TL+V+ K
Sbjct: 990  GRQGCDYILLGSDRVLIPPRHTSSPYSSALRDEYDITLVVYLK 1032


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,423,309
Number of Sequences: 59808
Number of extensions: 304460
Number of successful extensions: 1072
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)