Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0231
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    52   7e-08
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    25   9.4  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   9.4  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   9.4  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
 Frame = +1

Query: 67  MSWQDYVDKQLMASRCVTKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFENESLLTSG 243
           MSWQ YVD  L+ +  + +AAI    G+ VWA S GF +S  E+  + AGF++   +   
Sbjct: 1   MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGT 60

Query: 244 GVTMRARGTSTSVAQTISSARSLARSACI 330
           G+ +  +   T  A+  S    L +   I
Sbjct: 61  GIILAGQKYITIRAEGRSIYGKLQKEGII 89



 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 23/63 (36%), Positives = 35/63 (55%)
 Frame = +3

Query: 255 AGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLIT 434
           AG +YI +      I  KL K G+ C+ T+  +++S Y E   P +AA + E L +YL+ 
Sbjct: 65  AGQKYITIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVG 124

Query: 435 CGY 443
            GY
Sbjct: 125 VGY 127


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +2

Query: 254 CGHAVHL--PQWHRPYHPREAWQGRRALHED 340
           CG+  H+  P W  P H  E  +  RA+ ED
Sbjct: 357 CGYVHHVGGPLWGGPLHDAEFLKKMRAIAED 387


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 760 ISYAKLKMLHYDWSIKAKF*YKFN 689
           ISY +L +LH   ++K +F + FN
Sbjct: 255 ISYLRLSLLHCKEALKTRFDFGFN 278


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 149 MCGQSRKASKFQKMKWRR 202
           MC  S++   FQK KW R
Sbjct: 19  MCNYSKRLDTFQKKKWPR 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,855
Number of Sequences: 5004
Number of extensions: 67032
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)