Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0231
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865 56 4e-08
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297 56 4e-08
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750 52 4e-07
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222... 42 6e-04
08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104... 31 1.4
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386... 30 1.8
07_01_0657 - 4915264-4915386,4915586-4915714,4917773-4917859,491... 30 2.4
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406... 29 3.2
10_08_0933 + 21661209-21662813 28 9.8
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 28 9.8
>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
Length = 131
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +3
Query: 261 TRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITC 437
T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE+LG+YL+
Sbjct: 70 TKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQ 129
Query: 438 G 440
G
Sbjct: 130 G 130
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +1
Query: 67 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 234
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 235 TSGGV 249
G+
Sbjct: 61 APTGL 65
>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
Length = 131
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +3
Query: 261 TRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITC 437
T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE+LG+YL+
Sbjct: 70 TKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQ 129
Query: 438 G 440
G
Sbjct: 130 G 130
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +1
Query: 67 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 234
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 235 TSGGV 249
G+
Sbjct: 61 APTGL 65
>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
Length = 131
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = +3
Query: 258 GTRYIYLSGTDHI-IRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLIT 434
GT+Y+ + G + IR K G G+ KT ++++ +Y+EP+ P Q +VE+LG+YLI
Sbjct: 69 GTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVERLGDYLIE 128
Query: 435 CG 440
G
Sbjct: 129 QG 130
Score = 51.2 bits (117), Expect = 9e-07
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +1
Query: 67 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 234
MSWQ YVD LM +T AAI GHDG+VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60
Query: 235 TSGGVTMRARGTSTSVAQ 288
G+ + GT V Q
Sbjct: 61 APTGLFL--GGTKYMVIQ 76
>12_02_0932 +
24519204-24519380,24520074-24520128,24520251-24522202,
24522288-24522446,24522878-24523049,24523131-24523429,
24524037-24524285
Length = 1020
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/48 (43%), Positives = 31/48 (64%)
Frame = +1
Query: 160 KSEGFEISKDEVAKIVAGFENESLLTSGGVTMRARGTSTSVAQTISSA 303
K+ GF+I DE+ IV G +++ L+T GGVT A +TS A +S+A
Sbjct: 92 KAAGFQICADELGSIVEGHDSKKLITHGGVTGIADKLATSPADGLSTA 139
>08_01_0130 +
1040696-1041049,1042135-1042275,1042422-1042673,
1043797-1043904,1044289-1044593,1044720-1044841,
1044979-1045225,1045308-1045365,1045414-1045530,
1045718-1045753,1046492-1046554,1046958-1047047,
1047241-1047399,1047475-1047596,1048145-1048217,
1048307-1048375
Length = 771
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -3
Query: 518 NAVIISPWKKYYLIVLLDHGELRPLITTGN*IF 420
NA+ + +KKY L+ L+ +G++ PL+ G IF
Sbjct: 548 NAIAVEAYKKYILVSLIQNGQI-PLLDKGESIF 579
>05_03_0218 -
10437377-10437622,10437896-10438141,10438528-10438611,
10438720-10438854
Length = 236
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 278 QWHRPYHPRE-AWQ--GRRALHEDTASCGHFSL*RTHPTSAGRICRGEVRRIFNYLWLLE 448
+W R Y P W+ GRRA D S+ T PT GR+ E +I ++++LLE
Sbjct: 33 KWRRQYRPESICWEYEGRRAYIADYLDAKGRSILITKPTIKGRVSGKE--QIKHFVYLLE 90
>07_01_0657 -
4915264-4915386,4915586-4915714,4917773-4917859,
4918220-4918368,4918498-4918555,4918632-4920614,
4922064-4922123
Length = 862
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Frame = -3
Query: 338 LHAMHADLAKLRADDMVCATEVDVPRARIV------TPPLVSSDSFSKPATIFATSSFEI 177
+H H D+A + DM+ TEV P A IV P + +D P + +TS+ +
Sbjct: 444 IHEKH-DVADISGVDMIYTTEVPFPCAGIVCILNTEDPEIPCNDDIFTPGPVASTSTCDQ 502
Query: 176 SKPSD--FAHTLPS*PAMAAFVTHLDAIN 96
+ + P P AA + H D ++
Sbjct: 503 NSQHNMHLVSAKPIPPLNAADLNHTDLVS 531
>07_01_0004 +
35300-35533,35617-35732,39044-39287,39451-40578,
40657-40833
Length = 632
Score = 29.5 bits (63), Expect = 3.2
Identities = 29/99 (29%), Positives = 43/99 (43%)
Frame = -3
Query: 410 LHDRCGLLRLDGFFIERNDHSLLCLHAMHADLAKLRADDMVCATEVDVPRARIVTPPLVS 231
L RCG + DG + R + C D K R D + +T D A ++TP +VS
Sbjct: 289 LSPRCGAFK-DG--VPR----MSCAKIAGRDKLKRRGDWLSSSTGPD--DANLLTPKIVS 339
Query: 230 SDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAFVT 114
SDS S+ + + S P D + P P++ T
Sbjct: 340 SDSASEKCGGDCSENSANSPPLDLPLSFPLLPSLFPLAT 378
>10_08_0933 + 21661209-21662813
Length = 534
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 335 HAMHADLAKLRADDMVCATEVDVPRARIVTPPLVSSDSFSKPAT 204
H++ A LA L AD++ DV R PP ++ SF P T
Sbjct: 344 HSLGASLAVLAADELSACLSADVAEHR-RRPPPIAVVSFGGPKT 386
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -3
Query: 245 PPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAF 120
P V++DS++ + F + ++KP+ F HT + A+ ++
Sbjct: 120 PSFVTTDSYNLDTSPFLSDRSNMNKPNQFLHTSENGAAIGSY 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,096,061
Number of Sequences: 37544
Number of extensions: 442802
Number of successful extensions: 958
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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