Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0231
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protei...    54   1e-07
AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3 pr...    54   1e-07
AY530908-1|AAT01433.1|  132|Caenorhabditis elegans profilin-1 pr...    38   0.008
AL034393-15|CAA22318.1|  132|Caenorhabditis elegans Hypothetical...    38   0.008
U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protei...    37   0.014
AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2 pr...    37   0.014

>U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protein 3
           protein.
          Length = 126

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/66 (39%), Positives = 36/66 (54%)
 Frame = +1

Query: 67  MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGG 246
           MSW D ++  L+ S  V+KAAI G DG VWAKS+ F IS +E       F +   L   G
Sbjct: 1   MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTG 60

Query: 247 VTMRAR 264
           + +  +
Sbjct: 61  LRLEGQ 66



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = +3

Query: 258 GTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITC 437
           G +++ L+  +  I  K G  G    KT QAV+IS+YE+ +QP+  +     L +Y  + 
Sbjct: 65  GQKFLVLNADNDRIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSI 124

Query: 438 GY 443
            Y
Sbjct: 125 KY 126


>AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3
           protein.
          Length = 126

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/66 (39%), Positives = 36/66 (54%)
 Frame = +1

Query: 67  MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGG 246
           MSW D ++  L+ S  V+KAAI G DG VWAKS+ F IS +E       F +   L   G
Sbjct: 1   MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTG 60

Query: 247 VTMRAR 264
           + +  +
Sbjct: 61  LRLEGQ 66



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = +3

Query: 258 GTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITC 437
           G +++ L+  +  I  K G  G    KT QAV+IS+YE+ +QP+  +     L +Y  + 
Sbjct: 65  GQKFLVLNADNDRIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSI 124

Query: 438 GY 443
            Y
Sbjct: 125 KY 126


>AY530908-1|AAT01433.1|  132|Caenorhabditis elegans profilin-1
           protein.
          Length = 132

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
 Frame = +1

Query: 73  WQDYVDKQLMASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFENESLLTS 240
           W  Y+D    A+  + + AI G  DG+VWA++E    F+ S++E+   VA F + + + +
Sbjct: 4   WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFNDVTQVPA 63

Query: 241 GG 246
            G
Sbjct: 64  KG 65


>AL034393-15|CAA22318.1|  132|Caenorhabditis elegans Hypothetical
           protein Y18D10A.20 protein.
          Length = 132

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
 Frame = +1

Query: 73  WQDYVDKQLMASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFENESLLTS 240
           W  Y+D    A+  + + AI G  DG+VWA++E    F+ S++E+   VA F + + + +
Sbjct: 4   WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFNDVTQVPA 63

Query: 241 GG 246
            G
Sbjct: 64  KG 65


>U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protein 2
           protein.
          Length = 131

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +1

Query: 73  WQDYVDKQLMASRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFENESLLTSG 243
           W DY+      S  + +AAI G DG+VWA+S     F  ++ E+ +  A F + + +   
Sbjct: 4   WDDYIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGT 63

Query: 244 GVTM 255
           G  +
Sbjct: 64  GADL 67



 Score = 35.5 bits (78), Expect = 0.044
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 267 YIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLGEYLITCGY 443
           YI     + +I  K  + G    KT QA+VI++YE +  Q     + VE + +YL + GY
Sbjct: 72  YIVPRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131


>AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2
           protein.
          Length = 131

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +1

Query: 73  WQDYVDKQLMASRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFENESLLTSG 243
           W DY+      S  + +AAI G DG+VWA+S     F  ++ E+ +  A F + + +   
Sbjct: 4   WDDYIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGT 63

Query: 244 GVTM 255
           G  +
Sbjct: 64  GADL 67



 Score = 35.5 bits (78), Expect = 0.044
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 267 YIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLGEYLITCGY 443
           YI     + +I  K  + G    KT QA+VI++YE +  Q     + VE + +YL + GY
Sbjct: 72  YIVPRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,151,091
Number of Sequences: 27780
Number of extensions: 380961
Number of successful extensions: 860
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)