Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0231
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.          122   5e-30
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score =  122 bits (293), Expect = 5e-30
 Identities = 54/63 (85%), Positives = 60/63 (95%)
 Frame = +3

Query: 255 AGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLIT 434
           AG RYIYLSGTD +IRAKLGKVGVHCMKT QAVV+SLYE+PIQPQQAASVVEKLG+YL++
Sbjct: 64  AGNRYIYLSGTDRVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVS 123

Query: 435 CGY 443
           CGY
Sbjct: 124 CGY 126



 Score =  109 bits (263), Expect = 2e-26
 Identities = 48/63 (76%), Positives = 57/63 (90%)
 Frame = +1

Query: 67  MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGG 246
           MS QDYVDKQL+ASRCVTKAAIAGHDGN+WAKSEGFE+SK+E+ K+V GFE + +LTS G
Sbjct: 1   MSCQDYVDKQLLASRCVTKAAIAGHDGNLWAKSEGFEVSKEELTKLVQGFEEQDILTSSG 60

Query: 247 VTM 255
           VT+
Sbjct: 61  VTL 63


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 383 LDGFFIERNDHSLLCLH 333
           + G  IER DH++LC++
Sbjct: 327 ISGAPIERPDHAVLCVY 343


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 166 PTL-PTHCHHDRQWQLL*HI 110
           PT+ P H HH  Q Q L H+
Sbjct: 345 PTMGPPHHHHHHQTQSLQHL 364


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +1

Query: 79  DYVDKQLMASRCVTKAAIAGHDGN 150
           D +   L   RC  K    G DGN
Sbjct: 447 DVISGNLEKGRCTGKIVTVGSDGN 470


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 228 TANEWRRDDAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVIS 362
           T  +  R  A T    +S      +++   +  HC+ T+Q+VV++
Sbjct: 789 TTPKKERKTATTTQPVISSRKEQKKSEEKNINDHCVTTEQSVVVT 833


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 287  CATEVDVPRARIVTPPLVSS 228
            C TE D P A I    LV S
Sbjct: 1173 CQTEQDAPEAPIAIKALVMS 1192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,564
Number of Sequences: 438
Number of extensions: 4713
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)