Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0230
         (785 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    51   3e-05
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    38   0.29 
UniRef50_Q3US44 Cluster: 16 days embryo head cDNA, RIKEN full-le...    33   8.1  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 51.2 bits (117), Expect = 3e-05
 Identities = 29/77 (37%), Positives = 34/77 (44%)
 Frame = +3

Query: 354 PVDRMVNSRRRPKHVIADPPDXXXXXXXXXXXXHRPSRTRRLREGLDKRTNPRHSPLSFS 533
           P D    SRR P HV++DP D            + P R RR        TNP+  P+ F 
Sbjct: 26  PRDGATKSRRHPNHVLSDPRDSLSVLLDLSSTGYCPCRVRRA-------TNPKTQPMKFL 78

Query: 534 PDLLSGSRFRSGGRICE 584
                 SRFRS GR CE
Sbjct: 79  AGSSQSSRFRSDGRFCE 95


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 37.9 bits (84), Expect = 0.29
 Identities = 17/20 (85%), Positives = 18/20 (90%)
 Frame = +3

Query: 510 RHSPLSFSPDLLSGSRFRSG 569
           R  PLSFSPDLLSGSRFR+G
Sbjct: 393 RCCPLSFSPDLLSGSRFRTG 412


>UniRef50_Q3US44 Cluster: 16 days embryo head cDNA, RIKEN
           full-length enriched library, clone:C130040N14
           product:hypothetical protein, full insert sequence; n=1;
           Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
           full-length enriched library, clone:C130040N14
           product:hypothetical protein, full insert sequence - Mus
           musculus (Mouse)
          Length = 331

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 598 RVSVSNTPGLSPVSSPTRQGETEIASQGYQHR*EKKEFP 714
           R   S+TPG  P+S P+R G T    +G  HR +K++ P
Sbjct: 2   RSPASSTPGAPPMSLPSRPGLTGRGGEGRPHR-QKRDHP 39


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,152,146
Number of Sequences: 1657284
Number of extensions: 15060785
Number of successful extensions: 32250
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32242
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66673674990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)