Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0230
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         28   1.3  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.3  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    27   2.3  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    27   4.0  
SPBC582.09 |pex11||peroxisomal biogenesis factor 11|Schizosaccha...    26   5.3  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    26   7.0  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    26   7.0  

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +2

Query: 581 RRLLLIGSVLATLPV*AP*AHLHVKAKLK 667
           RR+LL+GS+L++LP+    A+  VKA ++
Sbjct: 155 RRILLVGSLLSSLPIIGYSAYSPVKAAVR 183


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +1

Query: 637 SSPTRQGETEIASQGYQHR*EKKEFPSR 720
           +S TR+GET+ AS+ Y++   +K+FPS+
Sbjct: 79  NSHTREGETKAASKWYRN--PRKDFPSQ 104


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 240 EVHVTHFTVSAIASEFFKMSLHIQSPSNNIRNAC*VSNPVDR 365
           EV + H T+S I S F +    ++SPS+   + C VS P  R
Sbjct: 406 EVFIQHITLSRILSHFVRKVYPVKSPSD---SHCKVSLPAVR 444


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = +1

Query: 553 RVSDPVVEYAKTALDRVSV---SNTP 621
           RVSDPV  + +TA+D  S+   S+TP
Sbjct: 667 RVSDPVARFCETAVDTSSIKCFSDTP 692


>SPBC582.09 |pex11||peroxisomal biogenesis factor
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 238

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 529 SRRIFSVGRVSDPVVEYAKTALDRVSVSNTPGLSPVSSPTRQGETEIASQGY 684
           SR++FS+G+V D +    K   D + + N    +  + PT     ++A  GY
Sbjct: 64  SRKLFSIGKVLDYI---CKVYFDSLKLQNPLSGNKSALPTISFTKDVAFAGY 112


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -1

Query: 362 VHRIGNSAGIPNIIARRLYMQTHLKKFASDRGNSKMCNMNFK*FLERSSLWDDAEGYPNR 183
           VHR  N     +  AR + + THL +  S R + +     F  FL  S  W   +   N+
Sbjct: 171 VHRPYNEHKSLSGTARYMSINTHLGREQSRRDDLESMGHVFMYFLRGSLPWQGLKAATNK 230

Query: 182 EK 177
           +K
Sbjct: 231 QK 232


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 563 SETRPTEKIRRETQWAVSRVSSLVEPFSQATGSTRTVT 450
           S T P +++R E        +S V P S   G++ TVT
Sbjct: 138 SHTHPPKRVRNEDDSLTFSKTSPVSPSSLKDGASNTVT 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,884
Number of Sequences: 5004
Number of extensions: 63928
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)