Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0230
(785 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15) 29 4.3
SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15) 29 4.3
SB_54562| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06) 29 5.6
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07) 29 5.6
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 29 5.6
SB_36517| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06) 29 5.6
SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_22667| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 29 5.6
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_1764| Best HMM Match : AT_hook (HMM E-Value=1.9) 29 5.6
SB_35914| Best HMM Match : Retrotrans_gag (HMM E-Value=0.46) 29 5.6
SB_35469| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05) 29 5.6
SB_31485| Best HMM Match : AT_hook (HMM E-Value=2.5) 29 5.6
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 29 5.6
SB_27101| Best HMM Match : Retrotrans_gag (HMM E-Value=0.26) 29 5.6
SB_4405| Best HMM Match : Retrotrans_gag (HMM E-Value=1.3) 29 5.6
SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32) 29 5.6
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_27476| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_18136| Best HMM Match : SpoIIP (HMM E-Value=4.4) 28 7.5
>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
Length = 1600
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQWVAFP 562
S+ S +F+ +K+ PS +PS A ++RQA+ P + + F GS W + P
Sbjct: 162 STLSAMSSFQRNKNTPPSDQSPSAAEKSRQASCPDCKASFHVFSEGSRGWNSKP 215
>SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 1485
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQW 550
S+ S +F+ +K++ PS +PS A ++RQA+ P + + F GS W
Sbjct: 355 STLSAMSSFQRNKNKPPSDQSPSAAEKSRQASCPDCKVSFHVFSEGSRGW 404
>SB_54562| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06)
Length = 909
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQWVAFP 562
S+ S +F+ +K+ PS +PS A ++RQA+ P + + F GS W + P
Sbjct: 231 STLSAMSSFQRNKNTPPSDQSPSAAEKSRQASCPDCKVSFHVFSEGSRGWNSKP 284
>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
Length = 1286
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQWVAFP 562
S+ S +F+ +K+ PS +PS A ++RQA+ P + + F GS W + P
Sbjct: 231 STLSAMSSFQRNKNTPPSDQSPSAAEKSRQASCPDCKVSFHVFSEGSRGWNSKP 284
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQWVAFP 562
S+ S +F+ +K+ PS +PS A ++RQA+ P + + F GS W + P
Sbjct: 231 STLSAMSSFQRNKNTPPSDQSPSAAEKSRQASCPDCKVSFHVFSEGSRGWNSKP 284
>SB_36517| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06)
Length = 817
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQWVAFP 562
S+ S +F+ +K+ PS +PS A ++RQA+ P + + F GS W + P
Sbjct: 27 STLSAMSSFQRNKNTPPSDQSPSAAEKSRQASCPDCKVSFHVFSEGSRGWNSKP 80
>SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQWVAFP 562
S+ S +F+ +K+ PS +PS A ++RQA+ P + + F GS W + P
Sbjct: 233 STLSAMSSFQRNKNTPPSDQSPSAAEKSRQASCPDCKVSFHVFSEGSRGWNSKP 286
>SB_22667| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 795
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQWVAFP 562
S+ S +F+ +K+ PS +PS A ++RQA+ P + + F GS W + P
Sbjct: 64 STLSAMSSFQRNKNTPPSDQSPSAAEKSRQASCPDCKVSFHVFSEGSRGWNSKP 117
>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1269
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQWVAFP 562
S+ S +F+ +K+ PS +PS A ++RQA+ P + + F GS W + P
Sbjct: 110 STLSAMSSFQRNKNTPPSDQSPSAAEKSRQASCPDCKVSFHVFSEGSRGWNSKP 163
>SB_1764| Best HMM Match : AT_hook (HMM E-Value=1.9)
Length = 291
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQWVAFP 562
S+ S +F+ +K+ PS +PS A ++RQA+ P + + F GS W + P
Sbjct: 9 STLSAMSSFQRNKNTPPSDQSPSAAEKSRQASCPDCKVSFHVFSEGSRGWNSKP 62
>SB_35914| Best HMM Match : Retrotrans_gag (HMM E-Value=0.46)
Length = 252
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQWVAFP 562
S+ S +F+ +K+ PS +PS A ++RQA+ P + + F GS W + P
Sbjct: 197 STLSAMSSFQRNKNTPPSDQSPSAAEKSRQASCPDCKVSFHVFSEGSRGWNSKP 250
>SB_35469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQWVAFP 562
S+ S +F+ +K+ PS +PS A ++RQA+ P + + F GS W + P
Sbjct: 231 STLSAMSSFQRNKNTPPSDQSPSAAEKSRQASCPDCKVSFHVFSEGSRGWNSKP 284
>SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)
Length = 848
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQWVAFP 562
S+ S +F+ +K+ PS +PS A ++RQA+ P + + F GS W + P
Sbjct: 325 STLSAMSSFQRNKNTPPSDQSPSAAEKSRQASCPDCKVSFHVFSEGSRGWNSKP 378
>SB_31485| Best HMM Match : AT_hook (HMM E-Value=2.5)
Length = 365
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQWVAFP 562
S+ S +F+ +K+ PS +PS A ++RQA+ P + + F GS W + P
Sbjct: 110 STLSAMSSFQRNKNTPPSDQSPSAAEKSRQASCPDCKVSFHVFSEGSRGWNSKP 163
>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
Length = 1258
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 565 PVVEYAKTALDRVSVSNTPGLSPVSSPTRQGETEIASQGYQHR*EKKEFPSRRILST 735
P + T L +TP +P++ PT T I YQ + +FPS ++LST
Sbjct: 285 PSTQLPSTQLPSTQFPSTP--APIN-PTPINPTPINCSSYQPNSHQPQFPSTQLLST 338
>SB_27101| Best HMM Match : Retrotrans_gag (HMM E-Value=0.26)
Length = 447
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQWVAFP 562
S+ S +F+ +K+ PS +PS A ++RQA+ P + + F GS W + P
Sbjct: 231 STLSAMSSFQRNKNTPPSDQSPSAAEKSRQASCPDCKVSFHVFSEGSRGWNSKP 284
>SB_4405| Best HMM Match : Retrotrans_gag (HMM E-Value=1.3)
Length = 286
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQWVAFP 562
S+ S +F+ +K+ PS +PS A ++RQA+ P + + F GS W + P
Sbjct: 231 STLSAMSSFQRNKNTPPSDQSPSAAEKSRQASCPDCKVSFHVFSEGSRGWNSKP 284
>SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32)
Length = 500
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQWVAFP 562
S+ S +F+ +K+ PS +PS A ++RQA+ P + + F GS W + P
Sbjct: 231 STLSAMSSFQRNKNTPPSDQSPSAAEKSRQASCPDCKVSFHVFSEGSRGWNSKP 284
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +1
Query: 463 VEPVACEKGSTSELT-LDTAH*VSRRIFSVGRVSD---PVVEYAKTALDRVSVSNTPGLS 630
+ PVA KG T T + A + R+ VG+ D P+V +T + V+ PGL
Sbjct: 1178 ITPVARVKGQTVRDTEVAMAPPICVRVMKVGQAQDVRKPIVPDHRTVIRAVTAIPHPGLL 1237
Query: 631 PV 636
PV
Sbjct: 1238 PV 1239
>SB_27476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 407 SS*SINGAFRHHKHRSPS*SNPSLARRARQAN*P*TQPT--EFLAGSSQWVAFPIR 568
S+ S +F+ +K+ PS +PS A ++RQA+ P + + F GS W + IR
Sbjct: 231 STLSAMSSFQRNKNTPPSDQSPSAAEKSRQASCPDCKVSFHVFSEGSRGWNSNLIR 286
>SB_18136| Best HMM Match : SpoIIP (HMM E-Value=4.4)
Length = 399
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = +1
Query: 448 PVTVLVEPVACEKGSTSELTLDTAH*V--SRRIFSVGRVSDPVVEYAKTALDR------- 600
P L+ P E G S+ LD + V +R F+ + + V+++ K A ++
Sbjct: 191 PTCRLINPTKPEIGKISKKILDRINNVIAKKRNFNQWKSTKAVIDWFKAAENKHQLNFIC 250
Query: 601 VSVSNTPGLSPVSSPTRQGETEIASQ 678
+S +PVSSP R+ +T + Q
Sbjct: 251 FDISEIMNQTPVSSPLRKKKTTVQFQ 276
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,571,942
Number of Sequences: 59808
Number of extensions: 489781
Number of successful extensions: 941
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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