Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0230
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.35 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.35 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   7.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = +1

Query: 544 SVGRVSDPVVEYAKTALDRVSVSNTPGLSPVSSPTRQGETEIASQGYQHR*EKKEFPSRR 723
           S   + +PVVE   +      +++ P  S  SSP  +G         ++  E  +   +R
Sbjct: 496 STAVIHEPVVETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKR 555

Query: 724 ILSTIPI 744
           + ST+ +
Sbjct: 556 LKSTVSL 562


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
 Frame = -1

Query: 491  EPFSQATGSTRTVTGACGA*KHR**IRRIRNDVL----RATSTVYHSVHRIGNSAGIPNI 324
            +P SQ     +  TG  G    R   R    D L    RA      SVHR G+  G+P+ 
Sbjct: 1015 KPQSQEANKPKPATGGKGTRPKRGKYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHS 1074

Query: 323  IARRLYMQTHLKK 285
                   + HL +
Sbjct: 1075 TLEYKVKERHLMR 1087



 Score = 25.0 bits (52), Expect = 0.80
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 635 TGLKPGVLLTLTLSRAVFAYSTTGSETRPTEKIRRETQ 522
           TG  P     +  +    A  TTG+ T PT ++R+  Q
Sbjct: 234 TGTGPATPSAVVATSNATAAMTTGTTTIPTRRLRKRRQ 271


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 708 LFFFLPMLIALRGYFSFALTCR 643
           +FF +PMLI L  Y    L  R
Sbjct: 219 IFFLIPMLIILVVYTRMGLKIR 240


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = +1

Query: 298 VCIYNLRAIIFGMPAEFPILWTEW 369
           + + +L  +I G+P E  + W ++
Sbjct: 75  LAVSDLLFLILGLPFELSVFWQQY 98


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 157 KSDVTDVFSRLGYP 198
           +S   D++SR+G+P
Sbjct: 358 QSQTIDIYSRIGFP 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,959
Number of Sequences: 438
Number of extensions: 4335
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)