Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0229
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 44 2e-05
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 44 3e-05
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 43 6e-05
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 42 1e-04
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 40 3e-04
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 39 7e-04
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc... 38 0.002
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 38 0.002
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2... 36 0.009
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 35 0.016
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 35 0.016
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 32 0.084
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 31 0.19
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 29 0.79
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 28 1.4
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 28 1.8
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 27 2.4
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 27 2.4
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 27 3.2
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 27 3.2
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 27 4.2
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 5.5
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 26 5.5
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.3
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 25 9.7
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 44.4 bits (100), Expect = 2e-05
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +1
Query: 511 ATVASFPFDTVRTRLIAEQKTNK--VYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPH 684
AT+ FP + +RTRL + + Y+GF++ K EG L+KGL P L ++AP
Sbjct: 350 ATIV-FPLNVIRTRLQTQGTSAHPATYDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAPS 408
Query: 685 AGIQFAVYK 711
I + VY+
Sbjct: 409 VAISYLVYE 417
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 44.0 bits (99), Expect = 3e-05
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +1
Query: 526 FPFDTVRTRL-IAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFA 702
+P D V+TR+ ++ K++ YNG + L ++K EGP L++G++P + AP ++FA
Sbjct: 27 YPLDVVKTRMQLSVGKSD--YNGTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFA 84
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 236 DKISTSIEPITDKQGS--KYSSILQALGSIIREEGVATLWSGHIPAQL-LSISYGIL 397
D I + I+ + G KY+ AL ++ REEG L+ G +P L L GIL
Sbjct: 221 DVIKSRIQTVPRIAGQVPKYNWAYPALVTVAREEGFTALYKGFVPKVLRLGPGGGIL 277
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 42.7 bits (96), Expect = 6e-05
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = +2
Query: 290 SSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEKLTDMCQSADRQFYTNHK 469
SS+ +++EGV LW G++ A+LL + YG +F F KL + ++ +
Sbjct: 49 SSLRPVFKETVQKEGVRALWRGNVVAELLYLVYGAAEFVAFSKLKHLTEN-----LAMND 103
Query: 470 HWINFCNGSIA 502
H +NF G+ A
Sbjct: 104 HAVNFLCGTSA 114
Score = 35.1 bits (77), Expect = 0.012
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +1
Query: 511 ATVASFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAG 690
AT+ S+P DT+RT+ + KT + L A + G F GL ++ QI P+AG
Sbjct: 118 ATLTSYPLDTMRTKFASYAKTPHM----LPATKKIYAEAGIKGFFPGLKFSVIQIGPYAG 173
Query: 691 IQFAVYK 711
F Y+
Sbjct: 174 CFFMFYR 180
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +1
Query: 529 PFDTVRTRLIAEQKT-NKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFAV 705
PF++++T +I ++K N GFL A +++ G L++GL T+ + A ++G++F
Sbjct: 124 PFESIKTAIIDDRKRPNPRLKGFLQASRIIVHENGIRGLYRGLAATVARQAANSGVRFTA 183
Query: 706 Y 708
Y
Sbjct: 184 Y 184
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +2
Query: 284 KYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEKLTDM 430
+Y + + I+ ++G+ WSG P I G + F +EK+ ++
Sbjct: 239 EYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGIVFTVYEKVMEI 287
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 529 PFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKG-LIPTLGQIAPHAGIQFAV 705
PFD V+ RL ++ + +YN L+ + + K EG +KG ++P LG I IQF
Sbjct: 37 PFDCVKVRLQSQSNVSPIYNNALDCVKKISKNEGLAAFYKGTVLPLLG-IGFCVSIQFTT 95
Query: 706 YK 711
++
Sbjct: 96 FE 97
Score = 35.9 bits (79), Expect = 0.007
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 517 VASFPFDTVRTRLIAEQKTNKV-YNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGI 693
+A++PFD V++++ + +K Y + G ++G +P L + AP +
Sbjct: 228 LAAYPFDIVKSKIQTDGFLSKATYKNSWQCAKGIYTKAGLRGFYRGFVPVLVRAAPANAV 287
Query: 694 QFAVYKLFTEHI 729
F VY+ ++HI
Sbjct: 288 TFYVYETVSQHI 299
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 39.1 bits (87), Expect = 7e-04
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +1
Query: 532 FDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPH 684
FDTV TR+ QK ++Y ++ + I++EG L+KG L +IAPH
Sbjct: 250 FDTVMTRMY-NQKNKELYKNPIDCILKTIRSEGFFALYKGFGAHLARIAPH 299
>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 300
Score = 37.9 bits (84), Expect = 0.002
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +1
Query: 502 SNLATVASFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAP 681
++ + + S P D ++TR I + + +GF L M+K EGP FKGL P L P
Sbjct: 222 ASASLIVSAPLDVIKTR-IQNKNFDNPQSGF-TILKNMLKFEGPTSFFKGLTPKLLTTGP 279
Query: 682 HAGIQFAV 705
F +
Sbjct: 280 KLVFSFTM 287
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 37.5 bits (83), Expect = 0.002
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Frame = +1
Query: 475 DQLLQWFNRSNLATVASF-------PFDTVRTRLIAEQKTNKV--YNGFLNALSVMIKTE 627
D++L W + A +A F P + VRTRL N Y G + ++ +
Sbjct: 267 DKVLDWGGKLGGAGIAKFMAAGIAYPHEVVRTRLRQSPSINGTPKYTGLIQCFKLVWMEQ 326
Query: 628 GPVVLFKGLIPTLGQIAPHAGIQFAVYKLFTEHI 729
G V L+ GL L ++ P+A I F Y++ I
Sbjct: 327 GIVGLYGGLTAHLLRVVPNACILFGSYEVIMHFI 360
>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 35.5 bits (78), Expect = 0.009
Identities = 24/95 (25%), Positives = 39/95 (41%)
Frame = +1
Query: 469 ALDQLLQWFNRSNLATVASFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFK 648
+LD + A V +P +RTRL Q + +N + + +G + +K
Sbjct: 186 SLDYIFMSAASKVFAAVNMYPLLVIRTRL---QVMRSPHRSIMNLVLQTWRLQGILGFYK 242
Query: 649 GLIPTLGQIAPHAGIQFAVYKLFTEHILIHVEKFQ 753
G +P L ++ P I F VY+ H K Q
Sbjct: 243 GFLPHLLRVVPQTCITFLVYEQVGMHFKTQSSKSQ 277
Score = 32.3 bits (70), Expect = 0.084
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 317 IIREEGVATLWSGHIPAQLLSISYGILQFATFEKL 421
+I+ EG+ ++G P+ LL +S G LQF +EKL
Sbjct: 143 LIKNEGLRGCYAGFAPS-LLGVSQGALQFMAYEKL 176
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 34.7 bits (76), Expect = 0.016
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = +2
Query: 203 SSFSPASRCSEDKISTSIEPITDKQGSKYSSILQALGSIIREEGVATLWSGHIPAQLLSI 382
S +S S KI P G S + Q I R EGV +LW G +P+ + +
Sbjct: 58 SQYSSTQPISSAKILGKGRPAPKPLGGPVSGLYQ----IARHEGVRSLWRGLVPSLTMLL 113
Query: 383 SYGILQFATFEKL 421
+QF +E+L
Sbjct: 114 PANTVQFLGYEQL 126
Score = 31.5 bits (68), Expect = 0.15
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +1
Query: 508 LATVASFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHA 687
LAT+ + PFD +T T + G + + K GP L+KG +P ++AP
Sbjct: 259 LATLLTQPFDVSKTAKQVHGHT--LTRG--QFMLTLWKRGGPKALWKGTLPRCVKVAPSC 314
Query: 688 GIQFAVYKLFTEHILIHVEKF 750
I + Y L ++ V+ +
Sbjct: 315 AIMISSYHLTKKYFSESVDAY 335
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 577 KVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFAVYK 711
K G ++ L + + EG L++GL+P+L + P +QF Y+
Sbjct: 80 KPLGGPVSGLYQIARHEGVRSLWRGLVPSLTMLLPANTVQFLGYE 124
Score = 25.8 bits (54), Expect = 7.3
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 502 SNLATVASFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAP 681
S + T+ P D V+TRL +E + +++ ++ K G + L QIA
Sbjct: 35 SVITTLTVTPLDVVKTRLQSESISQYSSTQPISSAKILGKGRPAPKPLGGPVSGLYQIAR 94
Query: 682 HAGIQ 696
H G++
Sbjct: 95 HEGVR 99
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 34.7 bits (76), Expect = 0.016
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 583 YNGFLNALSVMIKTEGPVVLFKGLIPTL-GQIAPHAGIQFAVYKLF 717
YN +A + K EG ++GL P+L G + H GIQF +Y+ F
Sbjct: 230 YNNTFDAFRKIYKYEGLAAFYRGLFPSLFGTL--HVGIQFPLYEYF 273
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 32.3 bits (70), Expect = 0.084
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 272 KQGSKYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEKLTDMC-QSADR 448
+ +Y+S+ L I EG+ + G+ L + YG +QFATF L ++
Sbjct: 51 QNNKEYTSLTSTLVKIWNREGLIGFFRGNGTNCLRAFPYGAVQFATFNMLKQRALKNRSH 110
Query: 449 QFYTNHK 469
Q NH+
Sbjct: 111 QNLENHE 117
Score = 31.1 bits (67), Expect = 0.19
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +1
Query: 544 RTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFAVYKLFTE 723
R ++I + + NK Y + L + EG + F+G + P+ +QFA + + +
Sbjct: 43 RMKIIFQVQNNKEYTSLTSTLVKIWNREGLIGFFRGNGTNCLRAFPYGAVQFATFNMLKQ 102
Query: 724 HIL 732
L
Sbjct: 103 RAL 105
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +1
Query: 508 LATVASFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIP 660
+A + PFD V+TR++ Q+ ++ + ++ EG + L+KG++P
Sbjct: 271 IAAALTTPFDVVKTRIMTSQQR----LSYVFTIKSIVAHEGFLALYKGIVP 317
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 29.1 bits (62), Expect = 0.79
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 284 KYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEKLTDMCQSADRQFYTN 463
KY S L ++ R EG+ + + +SI + +Q AT++ T M Y
Sbjct: 147 KYKSALHCATTVFRNEGLGAFYISYPTCIAMSIPFTAIQVATYD--TCMSFLNPNAVYDP 204
Query: 464 HKHWIN-FCNGSIAATL 511
H I+ +G+IA++L
Sbjct: 205 TSHIISGGLSGAIASSL 221
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 287 YSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEKLTDMCQ 436
Y S A+ I ++EG+ T + G+ L I + Q +EKL + Q
Sbjct: 155 YPSFRGAVKQIAKQEGMKTFFYGYRATILRDIPFSGFQLLFYEKLRQVAQ 204
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 517 VASFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKG 651
VAS+P DT+R R++ Y+ ++ EG FKG
Sbjct: 248 VASYPLDTIRRRMMMTSGEAVKYSSSFECGRQILAKEGARSFFKG 292
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 284 KYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEKLTDM 430
+Y I + EEGV +LW G+ L L FA +K M
Sbjct: 70 RYKGIGECFKRTAAEEGVISLWRGNTANVLRYFPTQALNFAFKDKFKKM 118
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 27.5 bits (58), Expect = 2.4
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +1
Query: 541 VRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFAVYKLFT 720
VRT LI QKT L+ + ++K++ V G+ P+L I + I++ +F
Sbjct: 419 VRTLLIQLQKTKVDVEVALSGIDRLLKSQELVFATVGITPSL--IFCYVIIRYVKANIFN 476
Query: 721 EHILIHVEKFQR 756
L E+ QR
Sbjct: 477 NDTLSRAERRQR 488
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Frame = -3
Query: 780 RFGASDTISLEF------LYMYQNVFSKEFVNSKLDTCMRCYLP 667
RF AS ++++ L+ Q VF K F N+ T + YLP
Sbjct: 38 RFAASTDVAIQLPDRNVTLWSRQAVFGKHFTNASATTVINLYLP 81
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +1
Query: 583 YNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFAVYKLFTEHILIHVEKFQRDS 762
Y +++ + K EG F+G T + APHAG+ Y+L +++ ++F S
Sbjct: 141 YTTIYSSIRDIWKKEGISGFFRGFGVTALRDAPHAGLYVYFYELSKQNLHKLFDRFSPSS 200
>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 281 SKYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQ 400
SK SI + + +EG LW GH + L ++ Y LQ
Sbjct: 151 SKRFSIKSIISELWEKEGARGLWKGHTISFLHNLLYSGLQ 190
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 675 YLPQCWN*TFKKNHRSLC 622
YL QCW FKK ++C
Sbjct: 501 YLQQCWGKIFKKKFTTIC 518
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 703 QQIGYLHEVLFAPMLELNL*KEPQVPLSLSLQIMH*ETHCR 581
++IG+L LFA + +L K+ +VP ++ HCR
Sbjct: 3 EEIGFLKNQLFADVKDLERKKKRRVPPEQRRRVFRACKHCR 43
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +2
Query: 203 SSFSPASRCSEDKISTSIEPITDKQGSKYSSILQALGSIIREEGVATLWSGHIPAQLLSI 382
S+FS C S+ + K+ KY S A+ S + + L++ I ++L +
Sbjct: 29 SAFSVKVPCEGAANCNSVRLVNSKEPEKYVSDANAIVSFLYWKQEEDLFNSFISSKLSIL 88
Query: 383 SYGILQF 403
+ LQF
Sbjct: 89 DWEALQF 95
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 25.8 bits (54), Expect = 7.3
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 366 RNYYLYLTGSFNLRLSKN*LICVRVPIANFT---RIISTGSTF 485
R + Y +F+LR +KN LI V +PI F+ IS G++F
Sbjct: 40 RTHGHYCLLNFSLRENKNYLIIVYLPIEGFSANHMCISHGTSF 82
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 445 SPILHES*ALDQLLQWFNRSNLATVASFPFDTV 543
SP+ ++ AL + +W +RS +AT+A D V
Sbjct: 200 SPLFIKAFALTFVSEWGDRSQIATIAMAASDNV 232
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,781
Number of Sequences: 5004
Number of extensions: 66829
Number of successful extensions: 197
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -