Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0229
(812 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 55 8e-08
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 52 4e-07
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 51 1e-06
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 49 4e-06
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 46 3e-05
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 43 3e-04
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 42 8e-04
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 41 0.001
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 41 0.001
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 41 0.001
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 41 0.001
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.013
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 36 0.030
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.090
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.090
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 34 0.12
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.16
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.16
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.21
SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015) 33 0.21
SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.64
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.84
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 30 1.9
SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0) 30 2.6
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 30 2.6
SB_23844| Best HMM Match : RRM_2 (HMM E-Value=4.8) 29 3.4
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039) 29 4.5
SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_21920| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_19076| Best HMM Match : HECT (HMM E-Value=0) 28 7.8
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 54.8 bits (126), Expect = 8e-08
Identities = 27/67 (40%), Positives = 39/67 (58%)
Frame = +1
Query: 511 ATVASFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAG 690
A + ++P D VR RL QK K Y G +NA + + + EG ++G +PTL I P+AG
Sbjct: 3 AALLTYPLDMVRARLAITQK--KKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAG 60
Query: 691 IQFAVYK 711
I F Y+
Sbjct: 61 ISFFTYE 67
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +2
Query: 275 QGSKYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEKLTDMCQSADRQF 454
Q KY+ ++ A I R+EG+ T + G++P + + Y + F T+E C+ A +F
Sbjct: 21 QKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYE----TCKKAFGEF 76
Query: 455 YTNHK 469
Y K
Sbjct: 77 YDGKK 81
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 52.4 bits (120), Expect = 4e-07
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +1
Query: 508 LATVASFPFDTVRTRLIAEQKTNKV-YNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPH 684
+A ++P D VR R+ E+ Y+ + V++++EG + LFKG+ P L ++AP
Sbjct: 694 VAQSGTYPLDVVRRRMQMERGEGMFKYSSTWDGFKVIVRSEGFIGLFKGMWPNLLKVAPT 753
Query: 685 AGIQFAVYKL 714
GIQFAVY++
Sbjct: 754 IGIQFAVYEV 763
Score = 36.7 bits (81), Expect = 0.022
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +1
Query: 565 QKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFAVYKLFTEHILIHV 741
Q TN Y+G L+ + + EG FKG + +I P+ +QFA Y+ F + I ++
Sbjct: 585 QVTNAKYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEEFKKGIAPYI 643
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 281 SKYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEK 418
+KYS + L I R+EG+ + G+ + + Y +QFA +E+
Sbjct: 589 AKYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEE 634
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 51.2 bits (117), Expect = 1e-06
Identities = 30/79 (37%), Positives = 47/79 (59%)
Frame = +1
Query: 475 DQLLQWFNRSNLATVASFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGL 654
D+LL + + +P + ++TRL A +KT + Y G L+A SV+ + EG ++GL
Sbjct: 232 DRLLAGSMAGVASQTSIYPLEVLKTRL-AIRKTGQ-YRGLLHAASVIYQKEGIRSFYRGL 289
Query: 655 IPTLGQIAPHAGIQFAVYK 711
P+L I P+AGI AVY+
Sbjct: 290 FPSLLGIIPYAGIDLAVYE 308
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +1
Query: 502 SNLATVASFPFDTVRTRLIAE--QKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQI 675
S +AS+P VRTRL A+ +K + ++ L +I +G L++GL P ++
Sbjct: 338 STCGQLASYPLSLVRTRLQAQAREKGGGQGDNMVSVLRKIITEDGFKGLYRGLAPNFLKV 397
Query: 676 APHAGIQFAVYK 711
AP I + VY+
Sbjct: 398 APAVSISYVVYE 409
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Frame = +1
Query: 508 LATVASFPFDTVRTRL-IAEQKTNKV--YNGFLNALSVMIKTEGPVVLFKGLIPTLGQIA 678
+AT ++ P D VR RL + + T + Y G ++AL + EG L+KGL+P+L IA
Sbjct: 41 VATASTHPLDVVRARLTVQDMSTRSISNYTGIVSALRRIHIEEGIRGLYKGLVPSLVSIA 100
Query: 679 PHAGIQFAVYKL 714
P G+Q +VY +
Sbjct: 101 PFLGVQQSVYDI 112
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 49.2 bits (112), Expect = 4e-06
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +1
Query: 508 LATVASFPFDTVRTRLIAEQ--KTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAP 681
+A V +P + ++TRL + K+N Y G +AL +++ EG + L+KG+ P+ + P
Sbjct: 165 IAMVTVYPCEVIKTRLTVQHVNKSNAHYKGMRHALKTILREEGILALYKGVTPSFLGLFP 224
Query: 682 HAGIQFAVYKL 714
AG F Y++
Sbjct: 225 FAGGSFLAYQI 235
Score = 33.1 bits (72), Expect = 0.28
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = +2
Query: 227 CSEDKISTSIEPITDKQGSKYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFA 406
C K +++ + +K + Y + AL +I+REEG+ L+ G P+ L + F
Sbjct: 173 CEVIKTRLTVQHV-NKSNAHYKGMRHALKTILREEGILALYKGVTPSFLGLFPFAGGSFL 231
Query: 407 TFEKLTDMCQSADRQFYTNHKHWINFC-NGSIAATL 511
++ L + + T ++N C G+ A TL
Sbjct: 232 AYQILDKVDSTRTEPSATPICMFVNGCVAGAFAHTL 267
Score = 29.1 bits (62), Expect = 4.5
Identities = 9/42 (21%), Positives = 22/42 (52%)
Frame = +2
Query: 296 ILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEKL 421
+++ S+ + EG+ W G+ + + Y +Q+A F ++
Sbjct: 97 LIRTFASVYKREGIKAFWKGNGVSCIRLFPYSAVQYAAFNRI 138
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +1
Query: 469 ALDQLLQWFNRSNLATVASFPFDTVRTRLIAEQKTNKVYNGFLNALS-VMIKTEGPVVLF 645
A+++L+ A ++P D VR+RL + ++ Y + + +K GP L+
Sbjct: 64 AINKLVAGSLAGMTACACTYPLDMVRSRLAFQVAQDQGYTTITQTIRCISVKEGGPKALY 123
Query: 646 KGLIPTLGQIAPHAGIQFAVYKLFTEHIL 732
KG +PTL I P GI F +++ + L
Sbjct: 124 KGFVPTLLTIVPAMGIGFYMFETMKAYFL 152
Score = 33.1 bits (72), Expect = 0.28
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 290 SSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEKLTDMCQSA 442
S +L A +I R EG+ + G+ L + YG +QF ++E + + Q++
Sbjct: 11 SEVLTAFRAIYRNEGLLAYFKGNGAMMLRTFPYGAVQFLSYEHYSKVLQTS 61
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +1
Query: 523 SFPFDTVRTR--LIAEQKTNKVYNGFLNALSVMIKTEG-PVVLFKGLIPTLGQIAPHAGI 693
++P D VR R L YN +N L + K +G L++GL ++ P I
Sbjct: 190 AYPLDVVRRRMQLAGAVPDGHKYNTCINTLVNVYKDDGIRRGLYRGLSINYLRVCPQVAI 249
Query: 694 QFAVYKL 714
F VY++
Sbjct: 250 MFGVYEV 256
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = +1
Query: 520 ASFPFDTVRTRLIAEQ---KTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAG 690
A +P D V+TR+ ++ + KVY ++ +++ EGP+ L++GL+P L ++P
Sbjct: 930 AVYPIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLLGVSPEKA 989
Query: 691 IQ 696
I+
Sbjct: 990 IK 991
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +1
Query: 511 ATVASFPFDTVRTRLIAEQ-KTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHA 687
A V P +T++ + I +Q + N Y GF + + ++KTEG ++KGL T+ + +
Sbjct: 151 AVVVVCPMETIKVKFIHDQTQPNPKYKGFFSGVRTILKTEGFFGVYKGLTATVIKQGSNQ 210
Query: 688 GIQFAVY 708
I+F VY
Sbjct: 211 MIRFFVY 217
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +1
Query: 508 LATVASFPFDTVRTRLIAEQKTNK-VYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPH 684
L +FP + V+T+L ++K K +Y G ++ + +K G + L++GL L P
Sbjct: 53 LEICCTFPTEYVKTQLQLDEKAAKPIYRGPIDCVKKTVKGHGVLGLYRGLSSLLYGSVPK 112
Query: 685 AGIQFAVYK 711
A ++FAV++
Sbjct: 113 ASVRFAVFE 121
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 41.5 bits (93), Expect = 8e-04
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 511 ATVASFPFDTVRTRL--IAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPH 684
A+VA P D ++TRL + + YNG ++ + EG +KG +P + IAP
Sbjct: 219 ASVAVNPLDVIKTRLQLLNRPQGEPNYNGIIDCAKKIYSNEGLAAFYKGAVPRMIVIAPL 278
Query: 685 AGIQFAVY 708
GI VY
Sbjct: 279 FGIAQTVY 286
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 511 ATVASFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVV-LFKGLIPTLGQIAPHA 687
A ++P D VR+RL + Y G + + TEG +V L++G PT + P
Sbjct: 12 ACSCTYPLDIVRSRLAFQVADEHTYCGICQTVKQIFMTEGGMVALYRGFTPTSLSMIPAV 71
Query: 688 GIQFAVYKLFTE 723
GI F ++ F +
Sbjct: 72 GIGFYAFESFKD 83
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +1
Query: 508 LATVASFPFDTVRTRLIAEQKTNK----VYNGFLNALSVMIKTEGPVVLFKGLIPTLGQI 675
+AT + P D VRTR + + K K VY G L+ + ++ EG + L+KG P +
Sbjct: 224 VATCVASPVDIVRTRFMTQPKDTKGRPLVYQGTLDCIYKTVRHEGILALYKGFFPNWTRT 283
Query: 676 APHAGIQFAVYK 711
I F VY+
Sbjct: 284 GLDTIIIFFVYE 295
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +2
Query: 248 TSIEPITDKQGSKYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEKLTD 427
TS + +Q Y+++ AL + +EEGV TLW G+IP + ++ Q AT+ +
Sbjct: 22 TSDGRLPPEQRRGYTNVFNALYRMSKEEGVLTLWRGYIPTAVRAMVVNAAQLATYSQAKQ 81
Query: 428 MCQS 439
+ S
Sbjct: 82 LLLS 85
Score = 40.3 bits (90), Expect = 0.002
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +1
Query: 502 SNLAT-VASFPFDTVRTRL----IAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTL 666
S LAT VAS P D +TR+ I + K Y G ++ L+ +++ EG L+KG P
Sbjct: 103 SGLATTVASMPVDIAKTRIQNMRIIDGKPE--YKGTMDVLARIVRNEGVFALWKGFTPYY 160
Query: 667 GQIAPHAGIQF 699
+I PH + F
Sbjct: 161 FRIGPHTVLTF 171
Score = 33.9 bits (74), Expect = 0.16
Identities = 25/74 (33%), Positives = 36/74 (48%)
Frame = +1
Query: 550 RLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFAVYKLFTEHI 729
RL EQ+ Y NAL M K EG + L++G IPT + Q A Y + +
Sbjct: 26 RLPPEQRRG--YTNVFNALYRMSKEEGVLTLWRGYIPTAVRAMVVNAAQLATYSQ-AKQL 82
Query: 730 LIHVEKFQRDSIRC 771
L+ + F+ D+I C
Sbjct: 83 LLSTKYFE-DNIVC 95
Score = 32.3 bits (70), Expect = 0.48
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 284 KYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEKL 421
+Y + L I+R EGV LW G P + +L F E+L
Sbjct: 132 EYKGTMDVLARIVRNEGVFALWKGFTPYYFRIGPHTVLTFIFLEQL 177
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +1
Query: 508 LATVASFPFDTVRTRLIAEQ--KTNKVYNGFLNALSVMIKTEGPVVLFKGLIPT 663
+A V +P + ++TRL + K+N Y G +AL +++ EG + L+KG+ P+
Sbjct: 434 IAMVTVYPCEVIKTRLTVQHVNKSNAHYKGMRHALKTILREEGILALYKGVTPS 487
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 227 CSEDKISTSIEPITDKQGSKYSSILQALGSIIREEGVATLWSGHIPAQL 373
C K +++ + +K + Y + AL +I+REEG+ L+ G P+ L
Sbjct: 442 CEVIKTRLTVQHV-NKSNAHYKGMRHALKTILREEGILALYKGVTPSFL 489
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 37.5 bits (83), Expect = 0.013
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 520 ASFPFDTVRTRLIAEQKTNKV-YNGFLNALSVMIKTEGPVVLFKGLIPTL 666
++FPFD +++R+ A+ K Y G ++ K EG +V +G+ PTL
Sbjct: 149 STFPFDVIKSRIQADGNLGKFRYKGMMDCALQSYKEEGMIVFTRGIWPTL 198
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +1
Query: 529 PFDTVRTRLI----AEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQ 696
P D V+ +L A++ T VY G ++ L + ++ G F+G T + P +
Sbjct: 53 PVDLVKIKLQMQTEAKRSTRSVYRGPVDCLVKLYRSRGLAGCFQGNTVTAVRDIPGFAVY 112
Query: 697 FAVYKLFTE 723
F VY+L +
Sbjct: 113 FGVYELLCD 121
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 36.3 bits (80), Expect = 0.030
Identities = 17/44 (38%), Positives = 30/44 (68%)
Frame = +1
Query: 526 FPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLI 657
+P + ++ RL ++KT +YNG L+A + +I+TEG L+KG +
Sbjct: 34 YPANLIKIRLQVQRKTT-LYNGSLDAFTKVIRTEGVRGLYKGYL 76
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 34.7 bits (76), Expect = 0.090
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 511 ATVASFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKG 651
A +AS+P DT+R R++ Y G ++ ++K EG + L KG
Sbjct: 225 AGLASYPIDTIRRRMMMTSGEAVKYKGSIDCTIQILKKEGAMSLMKG 271
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 34.7 bits (76), Expect = 0.090
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Frame = +1
Query: 502 SNLATVASFPFDTVRTRL-----------IAE--QKTNKV-YNGFLNALSVMIKTEGPVV 639
+++A A+ P DT + RL IA+ + T+ Y G L + + KTEG
Sbjct: 25 ASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGMLGTMVTLFKTEGMKT 84
Query: 640 LFKGLIPTLGQIAPHAGIQFAVY 708
++KGLIP + + A I+ +Y
Sbjct: 85 MYKGLIPGIHRQLCFASIRIGLY 107
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 34.3 bits (75), Expect = 0.12
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 583 YNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFAVY 708
++G + M+K EG LFKGL TL + P I FA+Y
Sbjct: 774 FSGIVPYARYMVKNEGIQSLFKGLGTTLLGVTPSRAIYFAIY 815
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 284 KYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFE 415
KY S Q LG+++REEG L+ G + + + F T+E
Sbjct: 971 KYRSFFQTLGTVLREEGWRGLYGGLGTHVIRQVPNTAIMFFTYE 1014
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/65 (23%), Positives = 33/65 (50%)
Frame = +2
Query: 227 CSEDKISTSIEPITDKQGSKYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFA 406
C + + + P ++S + AL I R EG+++LW G P ++++ ++ F
Sbjct: 40 CLCNALGSPYRPYPHPPHPPFTSSIDALIKIPRYEGLSSLWRGLPPTMVMAVPNTVIYFT 99
Query: 407 TFEKL 421
+++L
Sbjct: 100 LYDQL 104
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 33.9 bits (74), Expect = 0.16
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = +1
Query: 529 PFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFAVY 708
P + V+ L+ Q N + G L L + K EG + FKG + +I P++ +QFA Y
Sbjct: 54 PLERVKI-LLQIQVKNPKFKGVLPTLIQIGKEEGILGYFKGNGTNVIRIFPYSAVQFAAY 112
Query: 709 KLFTEHILIHV 741
+ + + I +V
Sbjct: 113 EEYKKGIAPYV 123
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 33.5 bits (73), Expect = 0.21
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 526 FPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIP-TLGQIAPHAGIQFA 702
FP D ++TR + + G + L ++ EGP+ L+KG +P + + H G+ F
Sbjct: 238 FPVDMLKTR-VQIAPMGRYPRGARDVLKEVLCNEGPMALYKGYVPGMIRAVVTHCGL-FI 295
Query: 703 VYKLFTEHILIHVE 744
Y+ FT + ++E
Sbjct: 296 GYE-FTMKAMNYIE 308
>SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)
Length = 1238
Score = 33.5 bits (73), Expect = 0.21
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 200 YSSFSPASRCSEDKISTSIEPITDKQGSKYSSILQALGSIIREEGVATLWS 352
+S+ +PAS ED S+S P K+GS + SI A + R + +W+
Sbjct: 128 HSNLTPASNGEEDNRSSSSHPKPKKRGSDFDSITYAEAAASRAQTPEGMWA 178
>SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 31.9 bits (69), Expect = 0.64
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 619 KTEGPVVLFKGLIPTLGQIAPHAGIQFAVYKLFTE 723
+TEG LFKGL P L + P I F Y+ E
Sbjct: 798 RTEGARSLFKGLCPNLLAVTPSRAIYFTTYQKLKE 832
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 31.5 bits (68), Expect = 0.84
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 562 EQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFAV 705
+ +TN VYNG + +IK E + L+KG+ L + I F V
Sbjct: 184 QTQTNNVYNGVFDCFKQIIKRESVLGLYKGMASPLAGLGLINAIIFGV 231
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +1
Query: 511 ATVASFPFDTVRTRLIAEQKTNK----VYNGFLNALSVMIKTEGPVVLFKGL-IPTLGQI 675
A + FP DT++ RL A +Y + +I+ EG LF+G+ +P L I
Sbjct: 52 ANLVGFPLDTIKVRLQAMPLPKPGEPWMYKNSFDCFFKIIRNEGVYYLFRGVTVPILNSI 111
Query: 676 APHAGIQFA 702
P+ + F+
Sbjct: 112 -PNTTVLFS 119
>SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 421
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 508 LATVASFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPT 663
+A S P D ++TR++ Y G + + + EG + L+KG +PT
Sbjct: 313 VAATISTPADVIKTRIMNNPSG---YQGAVECFMLAVHREGLLSLYKGWLPT 361
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 520 ASFPFDTVRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQF 699
A P DT++ RL A G L+ L+ +KTEG L+KG++ + AP + F
Sbjct: 86 AGQPLDTIKVRLQASFGA-----GPLDMLARTVKTEGVRGLYKGMLAPVLVAAPVTAVSF 140
>SB_23844| Best HMM Match : RRM_2 (HMM E-Value=4.8)
Length = 190
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +2
Query: 239 KISTSIEPITDKQGSKYSSILQALGSIIREEGVATLWS---GHIP-AQLLSISYGILQFA 406
K++T++ + K + +ALG ++R TL S G+I + LSI+ G+LQ
Sbjct: 93 KVNTTVRKLGIKGNNMTPEAGRALGEMLRHNTTITLLSLFHGNIGNSGALSIASGLLQNT 152
Query: 407 TFEKL 421
T EK+
Sbjct: 153 TLEKI 157
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Frame = +1
Query: 529 PFDTVRTRLI------AEQKTNKV--YNGFLNALSVMIKTEGPVVLFKGLIPT 663
PFD ++ R+ A Q +V Y+G + ++K EG + LFKGL P+
Sbjct: 49 PFDIIKKRIQVQGFEEARQSFGRVQQYDGVKDCFRTILKEEGAMGLFKGLAPS 101
>SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039)
Length = 54
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 589 GFLNALSVMIKTEGPVVLFKGLIPTLGQIAPHAGIQFAVYKLFTEHILI 735
G ++ L+ T G LF+G T+ ++ P+A IQF ++ + + + I
Sbjct: 1 GVVHVLTQTYTTNGFTGLFRGNSATMMRVVPYASIQFTSHEQYKKLLRI 49
>SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 382 ILRDPSICDFRKTN*YVSECRSPILHES*ALDQLLQ-WFNRSNLATVASFPFDTVRTRLI 558
ILR+P+IC+ TN EC+ + ++ ++ L+ N T S +T+ +R++
Sbjct: 1306 ILRNPNICNGNTTN-LALECKVSVDEKNPRVNGLVNATMNSKPEKTSNSVLTNTLNSRIL 1364
Query: 559 AEQK-TNKVYNGF 594
+K NK Y F
Sbjct: 1365 QTRKRKNKAYRNF 1377
>SB_21920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +2
Query: 200 YSSFSPASRCSEDKISTSIEPITDKQGSKYSSILQALGSIIREEGVATLWSGHIPAQLLS 379
++S+ + D+ S + + + + S L A G ++ ATL S +PA LL
Sbjct: 5 FASWRNSEEARTDRPSQQLRSLNGEWDAPCSGALSAAGVVVTRSVTATLASADVPAVLLP 64
Query: 380 I 382
+
Sbjct: 65 L 65
>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
Length = 2018
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 191 RCGYSSFSPASRCSEDKISTSIEPITDKQGSKYSSILQALGSIIRE 328
R G S+ + A+ + D T P TD+ G+ S++ +A G ++RE
Sbjct: 1070 RTGASNGASAATGANDLTGT---PTTDRMGNSTSALARAFGIVVRE 1112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,666,020
Number of Sequences: 59808
Number of extensions: 492289
Number of successful extensions: 1016
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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