Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0229
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    39   6e-05
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    39   6e-05
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.8  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    22   7.8  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    22   7.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 38.7 bits (86), Expect = 6e-05
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +1

Query: 502 SNLATVASFPFDTVRTRLIAEQ---KTNKVYNGFLNALSVMIKTEGPVVLFKG 651
           + +A + S+PFDTVR R++ +    K+  +Y   L+  + + KTEG    FKG
Sbjct: 223 TTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = +2

Query: 284 KYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEK 418
           +Y  ++     I +E+G  + W G++   +       L FA  +K
Sbjct: 52  RYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDK 96


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 38.7 bits (86), Expect = 6e-05
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +1

Query: 502 SNLATVASFPFDTVRTRLIAEQ---KTNKVYNGFLNALSVMIKTEGPVVLFKG 651
           + +A + S+PFDTVR R++ +    K+  +Y   L+  + + KTEG    FKG
Sbjct: 223 TTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = +2

Query: 284 KYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEK 418
           +Y  ++     I +E+G  + W G++   +       L FA  +K
Sbjct: 52  RYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDK 96


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -1

Query: 551 LVRTVSNGNEATVARL-LRLN 492
           L+R VSN N+  V +L LRL+
Sbjct: 35  LIRPVSNNNDTVVVKLGLRLS 55


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 541 VRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLF 645
           V  + +     +K  N FL   S+M + E P V+F
Sbjct: 664 VAIKTLKPGSADKARNDFLTEASIMGQFEHPNVIF 698


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 551 LVRTVSNGNEATVARLLRL-NHC-KS*SSAYDSCKIGDRHSDTY 426
           ++  V  GN   +  +  + N C ++     D C IG++++D Y
Sbjct: 93  MIEVVHAGNADDIQLVKGIANECIENAKGETDECNIGNKYTDCY 136


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 551 LVRTVSNGNEATVARLLRL-NHC-KS*SSAYDSCKIGDRHSDTY 426
           ++  V  GN   +  +  + N C ++     D C IG++++D Y
Sbjct: 93  MIEVVHAGNADDIQLVKGIANECIENAKGETDECNIGNKYTDCY 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,090
Number of Sequences: 438
Number of extensions: 4162
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)