Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0228
(713 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 123 2e-28
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 35 0.075
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 34 0.100
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 33 0.30
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 32 0.53
SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17) 29 2.8
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 29 2.8
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24) 28 6.5
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 28 8.6
SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 123 bits (296), Expect = 2e-28
Identities = 57/90 (63%), Positives = 59/90 (65%)
Frame = +2
Query: 254 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 433
TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 59 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRR 118
Query: 434 XXXXXXXXXXXXXXXXQARGHIIEKFSSFP 523
ARGH IEK + P
Sbjct: 119 FAVCSALAASALPALIMARGHRIEKIAEVP 148
Score = 83.4 bits (197), Expect = 2e-16
Identities = 35/69 (50%), Positives = 51/69 (73%)
Frame = +1
Query: 505 KVLELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 684
K+ E+PLV++D ++ + KT AV L+ + A+ D+ K S+++RAGKGKMRNRR + RK
Sbjct: 143 KIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRK 202
Query: 685 GPLIIFNKD 711
GPLII+N D
Sbjct: 203 GPLIIYNND 211
Score = 72.5 bits (170), Expect = 3e-13
Identities = 34/59 (57%), Positives = 44/59 (74%)
Frame = +3
Query: 78 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 254
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQ
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQ 58
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 34.7 bits (76), Expect = 0.075
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = +2
Query: 239 GGWSPTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 400
GGW WG G+ + R GGG R G +G M GG P W R
Sbjct: 14 GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 34.3 bits (75), Expect = 0.100
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = +2
Query: 239 GGWSPTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 400
GGW WG G+ + R GGG R G +G M GG P W R
Sbjct: 258 GGWGQGPGGGWGRGQGRG-MGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 365 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHW 255
HH CY H Y Y+ H H + + H YP RH+
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHY 53
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 31.9 bits (69), Expect = 0.53
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 251 PTSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 370
PT +E +G ++ R PR RGGG G G G RGGR
Sbjct: 982 PTPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 672 TTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQ 523
+T + HF KT R +H+K P E GL+D+LD G+ Q
Sbjct: 18 STVLHHFIDKHAKTPRFLHMKP-----NGPGEGGGSSGLLDMLDAAGFEQ 62
>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 324 WVPPPRTRGIRATARPVPHD 265
W+PP RTR R T PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247
>SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)
Length = 278
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 356 TCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWLVTSLL 237
TC+ HP + Y H+ H F Q H + RH+L TS L
Sbjct: 52 TCFPYHPHYHHHYRHNDH-YFHQDH----LYRHYLSTSAL 86
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/55 (34%), Positives = 22/55 (40%)
Frame = +3
Query: 444 QQPLLLLASQRSFRLEDTLLKSSRASLGCSRQSPGDQQDQTGCHLPEAPQGMV*Y 608
Q PLLLL + + R +D R S PG Q G P P GM Y
Sbjct: 546 QSPLLLLTPKHNGRQKDLENSFERPEFRRSHSQPGQFWQQAGAQFPSHP-GMFPY 599
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 365 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRY 273
HH RH R + +HHH H E+ ++H RY
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH-RY 353
>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 329 TYGYHHHGHAEFGQQHVRYPMI-RHWLVTSLLAHAVGLP-RVLGHRNVN 189
+Y +HHHG E Q V I R W+ L +H P RV+G ++
Sbjct: 21 SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 374 TYVHHDTCYRRHPDRTYGYHHHGHA 300
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 350 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRH 258
Y +HP T+ YHH H + ++ ++P + H
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTH 442
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 350 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRH 258
Y +HP T+ YH H + H ++P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261
>SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24)
Length = 1725
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 144 PFVFKAPIRPDLVNDVHVSMSKNSRQ--PYCVSKEAGHQPVPNHGVPDVLLP 293
PF F P+R +L+N++H+ ++ ++ + P+ G Q V N GV +P
Sbjct: 1264 PFYF--PLRLELINEIHLYITDDTGRTIPFLSGGFEGSQQVANPGVGLFTMP 1313
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 145 GRGLAAPCTVSLFSEYTDTKGRATDRLI 62
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1163
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 511 LELPLVVADKVQEINKTKQAVIF-LRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 678
+E+P+ ++ + ++ K KQ ++ +R+ S ++ YK R G K + + IQ
Sbjct: 283 MEMPINLSS-ISDVQKKKQKILSDIRQPNLHSSVIAQYKDYRKHCGNEKCSSNQNIQ 338
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 251 PTSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 370
PT + S +G ++ R PR RGGG G G G RGGR
Sbjct: 494 PTPSGS-SSGSSIVRRPRRRRGGGGGGGGGGGGGGGGRGGR 533
>SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 176 PGQ*CSRFYVQELEAALLREQG-GWSPTSAESWGTGRAVARIPRVRGGGT 322
P Q C + E+ +L G G P AE G ARI +RG GT
Sbjct: 596 PAQPCKHLHSYTFESNILGNTGTGGYPGFAERGGRASYQARIQDLRGKGT 645
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,875,100
Number of Sequences: 59808
Number of extensions: 473380
Number of successful extensions: 1563
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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