Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0227
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    29   0.46 
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    28   0.81 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   1.9  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   4.3  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    25   7.5  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    24   9.9  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   9.9  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    24   9.9  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    24   9.9  

>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 28.7 bits (61), Expect = 0.46
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +3

Query: 72  AFEEKEEELRDLYADLKHKLNIADI*IMDLKGSLVDTNVR---IYPTNGF-LEYIK 227
           +F+EK  EL     +LK KLN A+    +L  S  ++NV+   + P NG  LE +K
Sbjct: 584 SFQEKINELNSQIDELKLKLNEANKKYQELAISFENSNVKTQSVEPDNGLSLEALK 639


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 27.9 bits (59), Expect = 0.81
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 278 SDYETKCDVKDFDYFAKTVNLTNEDIELLR 367
           SDYE +C V+D   +  T+ +T  D  +L+
Sbjct: 406 SDYEKECKVQDIGLYEDTILITLSDGRILK 435


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 254  NILKLKNGSDYETKCDVKDFDYFAKTVNLTNEDIE 358
            N +K  N  +  T+C V+  DY   TV L  E I+
Sbjct: 1120 NAIKFTNVGEVFTRCSVEKIDYSTNTVVLKWECID 1154


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = +2

Query: 287 ETKCDVKDFDYFAKTVNLTNEDIELLRTIKKTISRGSAVKINNTEIEPEFVEHDKI 454
           E   +  D +  A   N+  ED+ L +T+ +TI++    K +  +    F+E+ ++
Sbjct: 711 ELALEADDCELAATIANIPEEDVVLKKTLWQTIAKYMFSKKSGIKETLRFLENSEV 766


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 63  IDNAFEEKEEELRDLYADLKHKL 131
           ID  F E+ E +R+ YAD  H L
Sbjct: 85  IDFEFSEELEPIRNAYADSLHNL 107


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +2

Query: 341 TNEDIELLRTIKKTISRGSAVK----INNTEIEPEFV 439
           T ED+ L  +IK  IS+  A+K    + +    PEFV
Sbjct: 416 TTEDLTLTLSIKDNISKSRAIKFVDCLKSNFENPEFV 452


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 460  CVYFIMFNKLRLYFCVIYFHS 398
            CVY I F  L  YF   YF++
Sbjct: 1129 CVYDISFGSLTFYFQKSYFNA 1149


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 227 RNQR*QSTRNILKLKNGSDY-ETKCDVKDFDYFAKTVNLTNEDIEL 361
           RNQ  Q  RNI   K  SDY +T+ D  + +  AK       +I L
Sbjct: 396 RNQLLQINRNINSTKENSDYLKTEYDEMENELKAKLSRKKEIEISL 441


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 260 LKLKNGSDYETKCDVKDFDYFAKTVNLTNEDIELL 364
           LK+++GS+ E++ D      ++ +   TN D  LL
Sbjct: 62  LKVESGSERESQSDKDSSKKYSDSAKSTNSDDHLL 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,773
Number of Sequences: 5004
Number of extensions: 27456
Number of successful extensions: 82
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)