Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0227
(465 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0672 + 20593277-20594026 33 0.15
06_03_0564 + 22218955-22219060,22219184-22219293,22222363-22223682 29 1.4
04_03_0054 - 10296278-10296727 29 2.4
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137... 29 2.4
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 28 4.3
03_01_0576 + 4255153-4255238,4256051-4256153,4256235-4256556,425... 27 5.6
12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266... 27 7.4
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 27 7.4
04_01_0059 - 605084-606679 27 7.4
07_03_1150 - 24375859-24376050,24376173-24376283,24376488-243766... 27 9.8
>07_03_0672 + 20593277-20594026
Length = 249
Score = 32.7 bits (71), Expect = 0.15
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 30 FIDDMNFKCQRIDNAFEEKEEELRDLYADLKHKLN 134
F+ + N KC R+ N + + + DLY DLK +N
Sbjct: 21 FMQNRNIKCSRLQNIQQSHPKAIMDLYLDLKVMVN 55
>06_03_0564 + 22218955-22219060,22219184-22219293,22222363-22223682
Length = 511
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 147 KCQQYLICVLGQHTDLSILLLFPQKRY 67
KC YL CVL T L +LL+ P+K Y
Sbjct: 172 KCLFYLCCVLPVLTILCLLLVMPRKPY 198
>04_03_0054 - 10296278-10296727
Length = 149
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +3
Query: 3 ELRKREWDKFIDDMNFKCQRIDNAFEEKEEELRDLYADLK---HKLNIAD 143
ELR+ +W+K +D+++ C + D + E+ D Y D K HK I +
Sbjct: 13 ELRREKWEKVLDEVSDFCDKYDIV----KLEMEDTYIDPKKHRHKSGITN 58
>02_04_0490 -
23411742-23412944,23413071-23413595,23413666-23413747,
23413841-23414050,23414371-23414523,23415335-23415447,
23415476-23415622
Length = 810
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 3 ELRKREWDKFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHK 128
ELR+ +W+K +D+++ C + D + E+ D Y D K +
Sbjct: 576 ELRREKWEKVLDEVSDFCDKYDIV----KLEMEDTYIDPKKR 613
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +3
Query: 24 DKFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHKLNIA 140
+K +MN + ++ + ++K EEL + A+L+ KLNI+
Sbjct: 222 EKANQEMNLELNKLKHMLKQKHEELNEKQAELE-KLNIS 259
>03_01_0576 +
4255153-4255238,4256051-4256153,4256235-4256556,
4257451-4257823,4257857-4258103,4258189-4258248,
4258767-4258836,4259299-4259357,4259855-4259944
Length = 469
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 3 ELRKREWDKFIDDMNFKCQRIDNAFE 80
E+ +RE++ F+D + + C NAFE
Sbjct: 255 EIFRREFEMFVDSVIYSCGEDGNAFE 280
>12_02_0585 +
20824752-20825954,20826141-20826329,20826533-20826690,
20826913-20827009,20827368-20827730,20829225-20829303,
20830180-20830286
Length = 731
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 78 EEKEEELRDLYADLKHKLNIADI*I-MDLKGSLVDTN 185
E+ EE++ DL D+ LNI D+ I + + VDT+
Sbjct: 402 EKMEEDIEDLIKDIPEVLNITDLRITVAISTGTVDTH 438
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 305 KDFDYFAKTVNLTNEDIELLRTIKKTISRGSAVKINNT-EIEPE 433
+DF F +T N + L+ I+KT+ +G I EIE E
Sbjct: 347 RDFSTFIRTDNTCGPEPPLVERIEKTVEQGEKTIIREVQEIEGE 390
>04_01_0059 - 605084-606679
Length = 531
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 24 DKFIDDMNFKCQRIDNAFE--EKEEELRDLYA 113
D+ + DM KC IDNA + EK RDL++
Sbjct: 289 DRCLIDMYCKCGSIDNALQVFEKAPRKRDLFS 320
>07_03_1150 -
24375859-24376050,24376173-24376283,24376488-24376655,
24376850-24377451,24377546-24377648,24378461-24378610,
24379918-24379956
Length = 454
Score = 26.6 bits (56), Expect = 9.8
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Frame = +3
Query: 6 LRKRE--WDKFIDDMN--FK-CQRIDNAFEEKEEELRDLYAD---LKHKLNIADI*IMDL 161
L+KRE +K + D N F+ CQ+ + E+ E ELR+ Y + L+ +LNI ++ +
Sbjct: 55 LQKRENNQEKMLLDKNAAFRACQKDRHYIEKLETELRNCYQEIDYLQDQLNIRNVEANIM 114
Query: 162 KGSLVDTNVRIYPTNGFLEYIKEIKDD 242
+ +++ F E ++ I D+
Sbjct: 115 GEHIHSLELKLTELEKFPERVRVIDDE 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,705,257
Number of Sequences: 37544
Number of extensions: 131262
Number of successful extensions: 324
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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