Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0227
         (465 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033)        31   0.62 
SB_40167| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_54664| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2)              28   3.3  
SB_41938| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_35649| Best HMM Match : M (HMM E-Value=6e-09)                       27   5.8  
SB_12316| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              27   7.7  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033)
          Length = 311

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
 Frame = +3

Query: 18  EWDKFIDDMNFKCQRIDNAFEEKEEELRDL----------YADLKHKLNIADI*IMDLKG 167
           ++++  D+ +   + + +   EK  E+RDL          Y DLK   N  ++   DL+G
Sbjct: 126 KYEELEDEKDEMQESLSDTIREKSREIRDLEADLEMSEQKYEDLKSSWNNTELVTSDLQG 185

Query: 168 SLVDTNVRIYPTNGFLEYIKEIKDD 242
            L+     +      +E +  +K+D
Sbjct: 186 ELMQAREEVIRAQSEVERLARMKED 210


>SB_40167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 27   KFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHKLNIADI*IMDLKGSLVDTNVRIYPTN 206
            K+I  MN K  +I   FE  EEE R  Y+ +   +  AD     +  ++ D N++I+  N
Sbjct: 1139 KYIFMMNTKTGKITRRFEALEEESR--YSPMP-PVTFADDETRLV--AITDKNMKIWTVN 1193

Query: 207  -GFLEYIKEIKDDKVPETY 260
             G L+Y   I D  V E Y
Sbjct: 1194 DGNLQYTLTIGDINVDEEY 1212


>SB_54664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 12  KREWDKFIDDMNFKCQRIDNAFEEKEEELRDLY 110
           K+ W+ FI ++  + +R++  FE+  E+LR  Y
Sbjct: 109 KKNWETFIGEIAEEEKRVEEEFEQSAEKLRARY 141


>SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2)
          Length = 108

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 154 WILKVH*LIQMLGFIQQMAFWNILKKSKMTKYQKHI 261
           W++ V  ++Q+LG +   AFW  ++KS   +  K I
Sbjct: 13  WVIVVIVILQVLGGLLAFAFWPNVRKSVQNQISKGI 48


>SB_41938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 456 FILSCSTNSGSISVLFIFTAEP 391
           F+++CSTN G+  ++F++   P
Sbjct: 484 FVVACSTNEGNWKIIFLYARVP 505


>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
          Length = 1279

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 54  CQRIDNAFEEKEEELRDLYADLKHK 128
           C  ++++FEEK+ EL DL   L+ K
Sbjct: 587 CDTLNSSFEEKDHELVDLTERLREK 611


>SB_12316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/76 (21%), Positives = 35/76 (46%)
 Frame = +3

Query: 27  KFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHKLNIADI*IMDLKGSLVDTNVRIYPTN 206
           K +  M  KCQ +   +EEK+ +  +L   L   L+  D  +  L+  +     R +  +
Sbjct: 509 KELRPMRQKCQELSEDYEEKKAQYENLATGLDSNLSKLDQEVRGLREEISQEESRYHYLH 568

Query: 207 GFLEYIKEIKDDKVPE 254
             ++ + EI+  ++ +
Sbjct: 569 AMMK-VLEIQQKRIDD 583


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +3

Query: 69   NAFEEKEEELRDLYADLKHKLNIADI*IMDLKGSLVDTNVRIYPTNGFLEYIKEIKDD 242
            N+ +EK EELR     L+ + NI +  + +LK  +   N  I   +  +E +K  +D+
Sbjct: 1439 NSLDEKIEELRRQVNTLRDEKNIVERDLNELKSKIDYYNQEIESRDKTIEDLKLKRDE 1496


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 3    ELRKREWDKFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHKLNIADI*IMDLKGSLVD 179
            EL K   D+ ID+   K +  +N   ++EE+      DLK +L  AD   ++L+  L D
Sbjct: 2996 ELHKTSKDRVIDEKTIKDKESENKTLKEEEQ------DLKRRLRQADNVQLNLRKDLED 3048


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,870,103
Number of Sequences: 59808
Number of extensions: 168938
Number of successful extensions: 477
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)