Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0227
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr...    31   0.31 
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr...    31   0.31 
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.       31   0.31 
Z69662-4|CAA93504.1|  244|Caenorhabditis elegans Hypothetical pr...    31   0.41 
AL034393-27|CAH19090.1|  710|Caenorhabditis elegans Hypothetical...    31   0.41 
AL008866-2|CAA15508.2|  710|Caenorhabditis elegans Hypothetical ...    31   0.41 
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    30   0.71 
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    30   0.71 
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    30   0.71 
U64862-2|AAZ32793.1|  372|Caenorhabditis elegans Lin-5 (five) in...    30   0.71 
AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical...    27   5.0  
Z82284-5|CAB05291.1|  418|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF016669-2|AAB66099.2|  455|Caenorhabditis elegans Hypothetical ...    27   6.6  
U97007-7|AAB52292.1|  441|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AL110484-3|CAB54394.1|  243|Caenorhabditis elegans Hypothetical ...    27   8.8  
AF101318-7|AAC69345.1|  826|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
           protein T10G3.5b protein.
          Length = 1203

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 10/37 (27%), Positives = 25/37 (67%)
 Frame = +3

Query: 18  EWDKFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHK 128
           E + FI+++  + +++ N   EK++E+ +L A+++ K
Sbjct: 692 ESNSFIEELKVQVEKVSNEISEKQQEVENLMAEMRDK 728


>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
           protein T10G3.5a protein.
          Length = 1205

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 10/37 (27%), Positives = 25/37 (67%)
 Frame = +3

Query: 18  EWDKFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHK 128
           E + FI+++  + +++ N   EK++E+ +L A+++ K
Sbjct: 694 ESNSFIEELKVQVEKVSNEISEKQQEVENLMAEMRDK 730


>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
          Length = 1205

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 10/37 (27%), Positives = 25/37 (67%)
 Frame = +3

Query: 18  EWDKFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHK 128
           E + FI+++  + +++ N   EK++E+ +L A+++ K
Sbjct: 694 ESNSFIEELKVQVEKVSNEISEKQQEVENLMAEMRDK 730


>Z69662-4|CAA93504.1|  244|Caenorhabditis elegans Hypothetical
           protein F56D5.5 protein.
          Length = 244

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +3

Query: 24  DKFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHK 128
           D+F+D +  + + +  A +EKEEE++ L  D++ K
Sbjct: 127 DQFVDFLQTETRSVKEALKEKEEEVKRLLVDMEGK 161


>AL034393-27|CAH19090.1|  710|Caenorhabditis elegans Hypothetical
           protein B0019.2 protein.
          Length = 710

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +3

Query: 6   LRKREWD--KFIDDMNFKC--QRIDNAFEEKEEELRDLYADLKH 125
           LR+REWD  + ID+        R+DNAF++ EE +R     LK+
Sbjct: 632 LRRREWDFDEEIDEEQNDIIDPRLDNAFQDIEESIRQFNCRLKN 675


>AL008866-2|CAA15508.2|  710|Caenorhabditis elegans Hypothetical
           protein B0019.2 protein.
          Length = 710

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +3

Query: 6   LRKREWD--KFIDDMNFKC--QRIDNAFEEKEEELRDLYADLKH 125
           LR+REWD  + ID+        R+DNAF++ EE +R     LK+
Sbjct: 632 LRRREWDFDEEIDEEQNDIIDPRLDNAFQDIEESIRQFNCRLKN 675


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 19/57 (33%), Positives = 33/57 (57%)
 Frame = +3

Query: 24  DKFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHKLNIADI*IMDLKGSLVDTNVRI 194
           D+  DD+N   QRIDN  E+ + E  ++ A L++K++     I +L+G +V    R+
Sbjct: 112 DRTQDDLNKFRQRIDNNVEQ-QREYSEMMAALQNKVHEYRKHIAELEGRMVGARNRM 167


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 19/57 (33%), Positives = 33/57 (57%)
 Frame = +3

Query: 24  DKFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHKLNIADI*IMDLKGSLVDTNVRI 194
           D+  DD+N   QRIDN  E+ + E  ++ A L++K++     I +L+G +V    R+
Sbjct: 185 DRTQDDLNKFRQRIDNNVEQ-QREYSEMMAALQNKVHEYRKHIAELEGRMVGARNRM 240


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 19/57 (33%), Positives = 33/57 (57%)
 Frame = +3

Query: 24  DKFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHKLNIADI*IMDLKGSLVDTNVRI 194
           D+  DD+N   QRIDN  E+ + E  ++ A L++K++     I +L+G +V    R+
Sbjct: 185 DRTQDDLNKFRQRIDNNVEQ-QREYSEMMAALQNKVHEYRKHIAELEGRMVGARNRM 240


>U64862-2|AAZ32793.1|  372|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform e protein.
          Length = 372

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 19/57 (33%), Positives = 33/57 (57%)
 Frame = +3

Query: 24  DKFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHKLNIADI*IMDLKGSLVDTNVRI 194
           D+  DD+N   QRIDN  E+ + E  ++ A L++K++     I +L+G +V    R+
Sbjct: 185 DRTQDDLNKFRQRIDNNVEQ-QREYSEMMAALQNKVHEYRKHIAELEGRMVGARNRM 240


>AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical
           protein Y39B6A.27 protein.
          Length = 473

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 126 CVLGQHTDLSILLLFPQKRYRSFGT*SSYHQ*TCPILFF 10
           C +     +   L+ P +R +SF     YH   C I FF
Sbjct: 373 CCINSVRSVICALVMPSRRSQSFAVARMYHAFACTICFF 411


>Z82284-5|CAB05291.1|  418|Caenorhabditis elegans Hypothetical
           protein T27E7.6 protein.
          Length = 418

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 18  EWDKFID--DMNFKCQRIDNAFEEKEEELRDLYADLKHKLN 134
           +++K +D  DM   C  +  A E ++ +    YAD+  KLN
Sbjct: 345 DFEKIMDKQDMKLVCHHLPKAVENQDFKKIKYYADMASKLN 385


>AF016669-2|AAB66099.2|  455|Caenorhabditis elegans Hypothetical
           protein K10G6.4 protein.
          Length = 455

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 3   ELRKREWDKFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHK 128
           E+R +   K  D +  K +R+   FE  E ++ DL+A+++ K
Sbjct: 154 EMRMKYDQKLKDIVMNKEKRVSPRFEHLEHKIEDLHAEIQKK 195


>U97007-7|AAB52292.1|  441|Caenorhabditis elegans Hypothetical
           protein ZC196.3 protein.
          Length = 441

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 48  FKCQRIDNAFEEKEEELRD 104
           F+C R+   FEEKEE++ D
Sbjct: 243 FECIRLKQRFEEKEEKVAD 261


>AL110484-3|CAB54394.1|  243|Caenorhabditis elegans Hypothetical
           protein Y38E10A.3 protein.
          Length = 243

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 24  DKFIDDMNFKCQRIDNAFEEKEEELRDLYADLKH 125
           D+  D + F+ + +     +KEEEL  L A+ K+
Sbjct: 127 DQVADYLQFEIRTVKEVLRQKEEELEKLMAENKY 160


>AF101318-7|AAC69345.1|  826|Caenorhabditis elegans Hypothetical
           protein Y73C8C.3 protein.
          Length = 826

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +2

Query: 311 FDYFAKTVNLTNEDIELLRTIKKT 382
           ++ F KT+N++NE+ + +R +KKT
Sbjct: 373 WENFYKTLNISNENSKEVRDVKKT 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,642,984
Number of Sequences: 27780
Number of extensions: 147757
Number of successful extensions: 568
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)