Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0225
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    78   2e-15
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    61   2e-10
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    61   2e-10
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    61   2e-10
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   3.2  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    27   4.3  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   5.6  

>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 36/84 (42%), Positives = 53/84 (63%)
 Frame = +3

Query: 3   VMHIHCAAEEITVKALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFA 182
           VMHIH A EE++   L+  +DK T  KSK  P F  +    I  +E    +C+E F+ + 
Sbjct: 580 VMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQ 638

Query: 183 QMGRFTLRDENKTIAIGKVLKVIE 254
            MGRFTLRD+  T+A+GKV+K+++
Sbjct: 639 YMGRFTLRDQGTTVAVGKVVKILD 662


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 30/87 (34%), Positives = 51/87 (58%)
 Frame = +3

Query: 3   VMHIHCAAEEITVKALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFA 182
           V+  H A        LI  +D+++G+K +  P+FVK     I ++  +  +C+E F  +A
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYA 417

Query: 183 QMGRFTLRDENKTIAIGKVLKVIEKSA 263
            +GRF +RD  +T+A+G V+K +EK A
Sbjct: 418 PLGRFAVRDMRQTVAVG-VIKAVEKVA 443


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 30/87 (34%), Positives = 51/87 (58%)
 Frame = +3

Query: 3   VMHIHCAAEEITVKALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFA 182
           V+  H A        LI  +D+++G+K +  P+FVK     I ++  +  +C+E F  +A
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYA 417

Query: 183 QMGRFTLRDENKTIAIGKVLKVIEKSA 263
            +GRF +RD  +T+A+G V+K +EK A
Sbjct: 418 PLGRFAVRDMRQTVAVG-VIKAVEKVA 443


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 30/87 (34%), Positives = 51/87 (58%)
 Frame = +3

Query: 3   VMHIHCAAEEITVKALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFA 182
           V+  H A        LI  +D+++G+K +  P+FVK     I ++  +  +C+E F  +A
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYA 417

Query: 183 QMGRFTLRDENKTIAIGKVLKVIEKSA 263
            +GRF +RD  +T+A+G V+K +EK A
Sbjct: 418 PLGRFAVRDMRQTVAVG-VIKAVEKVA 443


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 63  DKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQMGRFTLRD--ENKTIAIGK 236
           DK+TGE+       V  D+         GV+C++ F K + + R  + +  E +T+ I K
Sbjct: 396 DKETGERRLEAGAMVLADR---------GVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAK 446


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 328 KCIPGSQNPEKARVQLVILFFIGNNIFSAYLVVY 429
           + + G+ NP+ +R Q   ++F+G+  F+    VY
Sbjct: 334 QAVTGTMNPQASRTQQQPMYFMGSQQFNGMPSVY 367


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -1

Query: 369 YSSFFRILRPWNTFYMHFANINRFSKGLT*LNYNVV--PISQSPSKLFRSQW 220
           YSS +   R +N  Y     + R    ++ +   ++  P+SQ   K++R +W
Sbjct: 746 YSSMYVFFRLFNLLYERLYELQRLEDQVSIIQQRIIPNPVSQK-QKIWRDRW 796


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,739
Number of Sequences: 5004
Number of extensions: 62977
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)