Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0225
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 62 5e-10
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 62 5e-10
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 61 1e-09
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 57 1e-08
03_01_0548 + 4099386-4099847,4100435-4101316 52 4e-07
03_01_0547 + 4093196-4093657,4094267-4095148 52 4e-07
03_01_0544 + 4082528-4082989,4083585-4084466 52 4e-07
03_01_0543 + 4076981-4077442,4078145-4079026 52 4e-07
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 34 0.16
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 62.1 bits (144), Expect = 5e-10
Identities = 30/79 (37%), Positives = 45/79 (56%)
Frame = +3
Query: 9 HIHCAAEEITVKALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQM 188
HIH E V ++ L+DK G+ SKT PRF+K Q A++++ +C++ F K +
Sbjct: 596 HIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRAL 654
Query: 189 GRFTLRDENKTIAIGKVLK 245
GR LR TIA+G V +
Sbjct: 655 GRAFLRSSGSTIAVGVVTR 673
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 62.1 bits (144), Expect = 5e-10
Identities = 30/79 (37%), Positives = 45/79 (56%)
Frame = +3
Query: 9 HIHCAAEEITVKALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQM 188
HIH E V ++ L+DK G+ SKT PRF+K Q A++++ +C++ F K +
Sbjct: 596 HIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRAL 654
Query: 189 GRFTLRDENKTIAIGKVLK 245
GR LR TIA+G V +
Sbjct: 655 GRAFLRSSGSTIAVGVVTR 673
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 60.9 bits (141), Expect = 1e-09
Identities = 36/83 (43%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Frame = +3
Query: 3 VMHIHCAAEEITVKALICLVD-KKTGE------KSKTRPRFVKQDQVAIMRIECAGVICL 161
V+HIH EE + LI +D KK E K K +P FVK V + RI+ +IC+
Sbjct: 341 VLHIHSVVEECEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVKNGAVVVCRIQVNNLICI 400
Query: 162 EPFKKFAQMGRFTLRDENKTIAI 230
E F F Q+GRFTLR E K I
Sbjct: 401 ENFSDFPQLGRFTLRTEGKYTCI 423
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 57.2 bits (132), Expect = 1e-08
Identities = 25/71 (35%), Positives = 44/71 (61%)
Frame = +3
Query: 48 LICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQMGRFTLRDENKTIA 227
++ L+++KTG+ SK PRF+ Q A++ ++ +C+E F +GR LR + TIA
Sbjct: 584 ILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTIA 643
Query: 228 IGKVLKVIEKS 260
+G V +V E++
Sbjct: 644 VGIVSRVREQA 654
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/84 (28%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +3
Query: 12 IHCAAEEITVK--ALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQ 185
+ C I VK L+ +D+++G++ + P+F+K ++++ + +E F ++
Sbjct: 349 LDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPP 408
Query: 186 MGRFTLRDENKTIAIGKVLKVIEK 257
+GRF +RD +T+A+G V+K +EK
Sbjct: 409 LGRFAVRDMRQTVAVG-VIKNVEK 431
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/84 (28%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +3
Query: 12 IHCAAEEITVK--ALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQ 185
+ C I VK L+ +D+++G++ + P+F+K ++++ + +E F ++
Sbjct: 349 LDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPP 408
Query: 186 MGRFTLRDENKTIAIGKVLKVIEK 257
+GRF +RD +T+A+G V+K +EK
Sbjct: 409 LGRFAVRDMRQTVAVG-VIKNVEK 431
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/84 (28%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +3
Query: 12 IHCAAEEITVK--ALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQ 185
+ C I VK L+ +D+++G++ + P+F+K ++++ + +E F ++
Sbjct: 349 LDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPP 408
Query: 186 MGRFTLRDENKTIAIGKVLKVIEK 257
+GRF +RD +T+A+G V+K +EK
Sbjct: 409 LGRFAVRDMRQTVAVG-VIKNVEK 431
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/84 (28%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +3
Query: 12 IHCAAEEITVK--ALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQ 185
+ C I VK L+ +D+++G++ + P+F+K ++++ + +E F ++
Sbjct: 349 LDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPP 408
Query: 186 MGRFTLRDENKTIAIGKVLKVIEK 257
+GRF +RD +T+A+G V+K +EK
Sbjct: 409 LGRFAVRDMRQTVAVG-VIKNVEK 431
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 33.9 bits (74), Expect = 0.16
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Frame = +3
Query: 3 VMHIHCAAEEITVKALICLVD---KKTGE----KSKTRPRFVKQDQVAIMRIE 140
V+HIH EE + LI +D +K G+ KSK +P FVK V + R++
Sbjct: 296 VLHIHSVVEECEIVELIEEIDLKRRKEGDIKKKKSKRKPLFVKNGAVVVCRVQ 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,510,906
Number of Sequences: 37544
Number of extensions: 311240
Number of successful extensions: 600
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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