Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0225
         (822 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           91   1e-18
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 55   8e-08
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)            32   0.65 
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 91.1 bits (216), Expect = 1e-18
 Identities = 40/57 (70%), Positives = 47/57 (82%)
 Frame = +3

Query: 42  KALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQMGRFTLRDE 212
           K LI L+DKKTG+K +TRPRF+KQDQ+AI R+E  GVIC+E F  F QMGRFTLRDE
Sbjct: 490 KRLIALIDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRDE 546


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 25/84 (29%), Positives = 52/84 (61%)
 Frame = +3

Query: 9   HIHCAAEEITVKALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQM 188
           HI C  +++  K     +D+++G+K +  P+ +K    A++ +  +  +C+E F +F  +
Sbjct: 226 HIACKFDKLLEK-----IDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPL 280

Query: 189 GRFTLRDENKTIAIGKVLKVIEKS 260
           GRF +RD  +T+A+G V+K ++K+
Sbjct: 281 GRFAVRDMKQTVAVG-VIKSVDKT 303


>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
          Length = 80

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 99  RFVKQDQVAIMRIECAGVICLEPFKKFAQMGRFTLRDENKTIAIGKV 239
           R + ++  A + ++ +  +C+E +K +  +GRF LR    TIA G +
Sbjct: 32  RCLPKNSNAEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78


>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 95  TTLCETRSGCYYEDRMCRSYMLRTIQKICSNGQVHIKRRK*NHCD 229
           T +C T   C   D++C +      QK+C +G +H K  + + CD
Sbjct: 128 TAVC-TYVECTISDQLCGATCYNPAQKVCCDGVLHDKDARKSCCD 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,013,394
Number of Sequences: 59808
Number of extensions: 426083
Number of successful extensions: 722
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)