Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0225
(822 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 107 1e-23
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 61 1e-09
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 61 1e-09
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 61 1e-09
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical pr... 32 0.43
Z93389-6|CAB07669.2| 300|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z68342-9|CAD91630.2| 626|Caenorhabditis elegans Hypothetical pr... 28 9.3
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 107 bits (256), Expect = 1e-23
Identities = 52/84 (61%), Positives = 63/84 (75%)
Frame = +3
Query: 3 VMHIHCAAEEITVKALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFA 182
V+HI A EE+TVK +I +DKKTGEK R +FVKQD+ IMR+E LEPFK++
Sbjct: 451 VLHIQSAVEEVTVKGVIATIDKKTGEKK--RAKFVKQDEKCIMRLESPEPFVLEPFKEYP 508
Query: 183 QMGRFTLRDENKTIAIGKVLKVIE 254
+GRFTLRDE KTIAIGKVLKV+E
Sbjct: 509 YLGRFTLRDEGKTIAIGKVLKVVE 532
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 60.9 bits (141), Expect = 1e-09
Identities = 31/84 (36%), Positives = 50/84 (59%)
Frame = +3
Query: 9 HIHCAAEEITVKALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQM 188
HI C E+ K VD++TG+K + P+F+K I+ + +C+E F +A +
Sbjct: 333 HIACKFNELKEK-----VDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPL 387
Query: 189 GRFTLRDENKTIAIGKVLKVIEKS 260
GRF +RD +T+A+G V+K +EKS
Sbjct: 388 GRFAVRDMRQTVAVG-VIKSVEKS 410
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 60.9 bits (141), Expect = 1e-09
Identities = 31/84 (36%), Positives = 50/84 (59%)
Frame = +3
Query: 9 HIHCAAEEITVKALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQM 188
HI C E+ K VD++TG+K + P+F+K I+ + +C+E F +A +
Sbjct: 367 HIACKFNELKEK-----VDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPL 421
Query: 189 GRFTLRDENKTIAIGKVLKVIEKS 260
GRF +RD +T+A+G V+K +EKS
Sbjct: 422 GRFAVRDMRQTVAVG-VIKSVEKS 444
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 60.9 bits (141), Expect = 1e-09
Identities = 31/84 (36%), Positives = 50/84 (59%)
Frame = +3
Query: 9 HIHCAAEEITVKALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQM 188
HI C E+ K VD++TG+K + P+F+K I+ + +C+E F +A +
Sbjct: 367 HIACKFNELKEK-----VDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPL 421
Query: 189 GRFTLRDENKTIAIGKVLKVIEKS 260
GRF +RD +T+A+G V+K +EKS
Sbjct: 422 GRFAVRDMRQTVAVG-VIKSVEKS 444
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 48.4 bits (110), Expect = 6e-06
Identities = 28/82 (34%), Positives = 39/82 (47%)
Frame = +3
Query: 6 MHIHCAAEEITVKALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQ 185
++ H T L+ ++K GE K PRF+ + A++ IE I +E F
Sbjct: 508 LYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRA 567
Query: 186 MGRFTLRDENKTIAIGKVLKVI 251
+GR T R TIA G V KVI
Sbjct: 568 LGRVTFRAGGNTIAAGIVEKVI 589
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 48.4 bits (110), Expect = 6e-06
Identities = 28/82 (34%), Positives = 39/82 (47%)
Frame = +3
Query: 6 MHIHCAAEEITVKALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQ 185
++ H T L+ ++K GE K PRF+ + A++ IE I +E F
Sbjct: 526 LYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRA 585
Query: 186 MGRFTLRDENKTIAIGKVLKVI 251
+GR T R TIA G V KVI
Sbjct: 586 LGRVTFRAGGNTIAAGIVEKVI 607
>Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical
protein K08E7.7 protein.
Length = 729
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -2
Query: 752 DGINLLLIRDHSSMKSESLTIDN-YNDITTPIIXXXXXXXXXXVSTFLYKPL 600
DG+NLL R+H S K + D YN TT + S FLYK L
Sbjct: 12 DGLNLLYRREHMSKKYYMMLYDAVYNICTTTTLANSNNNSPEFASEFLYKQL 63
>Z93389-6|CAB07669.2| 300|Caenorhabditis elegans Hypothetical
protein T13F3.5 protein.
Length = 300
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 125 YYEDRMCRSYMLRTIQKICSNGQVHIKRRK*NHC 226
+ ED+ + LR + + NG+VH+K K +HC
Sbjct: 119 FLEDKSIQDNGLRLLDVMKQNGRVHLKSIKFSHC 152
>Z68342-9|CAD91630.2| 626|Caenorhabditis elegans Hypothetical
protein F38E11.12 protein.
Length = 626
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 240 LKVIEKSALHCNLAR-LGLLRTY*YLQSACKMYSRVXXXXXXXXTACYIIFHRKQYIFCI 416
L + + SA C L R L + R ++ + ++V TAC+++FH +F I
Sbjct: 155 LLIRKTSAAFCRLNRFLKIYRIANFIAQSYGKLTQVTISLSKIFTACFLLFHVNACVFYI 214
Query: 417 FS 422
S
Sbjct: 215 IS 216
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,074,323
Number of Sequences: 27780
Number of extensions: 347382
Number of successful extensions: 937
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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