Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0225
         (822 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    56   3e-10
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    52   5e-09
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   4.5  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 56.4 bits (130), Expect = 3e-10
 Identities = 27/83 (32%), Positives = 47/83 (56%)
 Frame = +3

Query: 9   HIHCAAEEITVKALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQM 188
           HI C   EI  K      D++TG+ ++  P+ +K    AI+ ++    +C+E F++F  +
Sbjct: 367 HIACKFAEIKEKC-----DRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPL 421

Query: 189 GRFTLRDENKTIAIGKVLKVIEK 257
           GRF +RD  +T+A+G +  V  K
Sbjct: 422 GRFAVRDMRQTVAVGVIKSVTFK 444


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 52.4 bits (120), Expect = 5e-09
 Identities = 26/85 (30%), Positives = 46/85 (54%)
 Frame = +3

Query: 9   HIHCAAEEITVKALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQM 188
           HI C   +I  K      D++ G+ ++  P+ +K    AI+ +  +  +C E F++F  +
Sbjct: 367 HIACKFADIKEKC-----DRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPL 421

Query: 189 GRFTLRDENKTIAIGKVLKVIEKSA 263
           GRF +RD  +T+A+G +  V  K A
Sbjct: 422 GRFAVRDMRQTVAVGVIKAVTFKDA 446


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 463 NI*NDLTEYNNNRQLNMQKIY 401
           N  N+   YNNN   N +K+Y
Sbjct: 333 NYNNNYNNYNNNNYNNYKKLY 353


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 454 NDLTEYNNNRQLNMQKIY 401
           N+   YNNN   N +K+Y
Sbjct: 335 NNYNNYNNNYNNNYKKLY 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,363
Number of Sequences: 438
Number of extensions: 4306
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)