Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0224
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    30   0.27 
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    29   0.47 
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    28   1.1  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    27   2.5  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    27   2.5  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   3.3  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    25   7.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.7  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.7  

>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 77  EQREGGIYARPPLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLPPHLTK 235
           ++R   ++   P+  +  S E+ S  +     ++  Q+ K  KP SLPPHL K
Sbjct: 187 DERLSQVHTDLPMEEKSES-EQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEK 238


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 98  YARPPLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLPPHLTKEMPQAV 253
           + R PLP + S +   S+P++L+ + S   ++  +KP   PP     M  AV
Sbjct: 83  FQRNPLPAQYSDISSNSLPLELL-SQSTTMEYVLSKPVKSPPVFLFVMDTAV 133


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +2

Query: 38  RPALSVHTFSSDAEQREGGIYARPPLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSL 217
           R +  + + S +++Q   G   RPP PT  ++      P    ++ S     + N P S 
Sbjct: 157 RSSSHIQSLSPESKQTSDG--HRPPSPTSITTTSTSIDPSVAFSSKSTLATTRTNAPLSR 214

Query: 218 PPHLTKEMP 244
           P   TK  P
Sbjct: 215 PSQPTKASP 223


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
 Frame = +2

Query: 167 NANSPQQD-----FKHNKPSSLPPHLTKE 238
           NANSPQ +     F+H+ P SL P +T +
Sbjct: 252 NANSPQSNTPLSTFRHSSPLSLSPVITSD 280


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 128 SSLERPSVPVKLINANSPQQDFKHNKPSSLPP 223
           +S  +PS+   L N ++    F  NKPS  PP
Sbjct: 829 TSDSKPSLKSPLFNFSADAPTFTFNKPSETPP 860


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 158 KLINANSPQQDFKHNKPSSLPPHLTKEMP 244
           KL+++ S Q  F ++K S+   HL+K +P
Sbjct: 822 KLVSSWSKQDAFDYSKSSTHQEHLSKNLP 850


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 246 CGISLVRCGGSDEGLLC 196
           CG+S++R GG+ E  LC
Sbjct: 321 CGVSVLRSGGTLETALC 337


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 489 SFSGATQRYDLRIDVCVLDLMLNC 418
           SF  A ++++  I +C L L ++C
Sbjct: 329 SFGAALKQFESSIPICTLQLFMDC 352


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +2

Query: 35  PRPALSVHTFSSDAEQREGGIYARPPLPTRCSSLERPSVPVKLINANS 178
           P P+ S     S   Q      A  PLPT  ++   P  P + ++ NS
Sbjct: 153 PPPSYSSSGSYSQTYQSNANYTASSPLPTASANAPLPVPPPRRVSQNS 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,739,319
Number of Sequences: 5004
Number of extensions: 28815
Number of successful extensions: 95
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)