Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0224
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163 31 0.48
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 30 1.5
10_02_0023 + 4306350-4306908,4308429-4308814,4308917-4308991,430... 29 1.9
01_06_1377 + 36764461-36765339 29 1.9
04_04_1410 + 33363784-33364086,33364221-33364280,33364388-333644... 29 3.4
07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056 28 5.9
06_01_0656 - 4759627-4759799,4759880-4759968,4760657-4760775 28 5.9
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 28 5.9
11_06_0757 + 26964983-26965048,26965470-26965874,26966921-269678... 27 7.8
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413 27 7.8
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 27 7.8
03_03_0174 - 15124079-15124115,15124198-15124302,15124333-151249... 27 7.8
01_01_0930 + 7347680-7347886,7348030-7348082,7348175-7348247,734... 27 7.8
>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
Length = 723
Score = 31.5 bits (68), Expect = 0.48
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = -1
Query: 291 GGGQRSQIRHVHETACGIS-LVRCGGSDE----GLLCLKSCCGEFALISLTGTLGRSKDE 127
GGG+R ++ + ++A G + + G + G C K G L + GTL + E
Sbjct: 554 GGGKRCKVDNCSKSAQGSTDFCKAHGGGKRCTWGTGCEKFARGRSGLCAAHGTLAAKQQE 613
Query: 126 HLVGNGGRA*IPPSLCS 76
N G IPP L S
Sbjct: 614 RDAANNGAGMIPPGLFS 630
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = -3
Query: 538 SILPRDIEKLRARPLRKLQWRDAALR--SQNRRLRAGLDAEL*GLR--QRRLLDFRSRLT 371
+I+P +L A+ + RDA R S+N RLRA LDA R ++R+L+ ++T
Sbjct: 130 AIVPFLENELAAKSSELGRCRDALTRLESENARLRAALDAAAASSRDNEQRILEMERQMT 189
Query: 370 TLKTIR 353
L+ R
Sbjct: 190 ELRKRR 195
>10_02_0023 +
4306350-4306908,4308429-4308814,4308917-4308991,
4309330-4309539,4309649-4309961,4310035-4310130,
4310220-4310357,4310436-4310536,4310645-4310712,
4310800-4310849,4311790-4311848,4312399-4312530
Length = 728
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 17 AYERNHPRPALSVHTFSSDAEQREGG---IYARPPLPTRCSSLERPSVPVKL 163
A ER PRPA SVHT S+A E G Y PP P S P P +
Sbjct: 664 ARERVAPRPAYSVHT--SNAAGYEAGYAYTYLPPPPPPPPSISYHPPPPASI 713
>01_06_1377 + 36764461-36765339
Length = 292
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +2
Query: 35 PRPALSVHT---FSSDAEQREGGIYARPPLPTRCSSLERPSVPVKLINANSPQ 184
P PA S + S+ R GG Y+ PP P + PS PV+ P+
Sbjct: 176 PPPAYSAPPPPQYGSEQYYRSGGYYSAPPPPPQYEYTAGPSAPVEYNRQYDPR 228
>04_04_1410 +
33363784-33364086,33364221-33364280,33364388-33364464,
33365032-33365089,33365179-33365262,33365358-33365394,
33365855-33365924,33366655-33366849,33366947-33367039,
33367187-33367418,33367515-33367598,33368205-33368301,
33368510-33368577,33368662-33368739,33368823-33368945,
33369059-33369172,33369288-33369368
Length = 617
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 35 PRPALSVHTFSSDAEQREGGIYARPPLPTRCS 130
P SVH + D R+GG PP P+ C+
Sbjct: 355 PDTFFSVHADAEDGSPRKGGGSLAPPFPSPCT 386
>07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056
Length = 1109
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Frame = -1
Query: 303 GVGAGGGQRSQIRHVHETA-----CGISLVR-CGGSDEGLLCLKSCCGEFALISLTGTLG 142
G G GGG + H+ T+ C S V C S EG+ + F +
Sbjct: 761 GGGGGGGGKCGAFHMSATSSPPSGCSSSCVTGCSSSSEGVKVFRLDKTAFTYRDIVAATS 820
Query: 141 RSKDEHLVGNGG 106
D+ +VG GG
Sbjct: 821 GFSDDRVVGRGG 832
>06_01_0656 - 4759627-4759799,4759880-4759968,4760657-4760775
Length = 126
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 95 IYARPPLPTRCSSLERPSVPVKLINANSPQQDF-KHN 202
+ A P P +L+ S+PV L ++N P F KHN
Sbjct: 54 LMAEPVHPESSPTLDTGSIPVNLQHSNEPSSIFPKHN 90
>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
Length = 272
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 68 SDAEQREGGIYARPP---LPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLPPHLTKE 238
SD ++ E IYA P LP R S R S+PV A P K + P + P + +
Sbjct: 18 SDMDEIESLIYAAPSATVLPARPPSPPRASIPVSTSPAPLP-APAKPSLPGASVPIIVPQ 76
Query: 239 MPQA 250
P A
Sbjct: 77 APPA 80
>11_06_0757 +
26964983-26965048,26965470-26965874,26966921-26967814,
26972063-26972512,26973013-26973637,26994014-26994651,
26994967-26995032
Length = 1047
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 303 GVGAGGGQRSQIRHVHETACGISLVRCGGSDEGLLC 196
GV G +S I H+H A +S + CG D +C
Sbjct: 742 GVLYAGEVKSFIIHLHLPAASVSSLECGYCDAATVC 777
>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
Length = 533
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -3
Query: 556 SDLTASSILPRDIEKLRARPLRKLQWRDAALRSQNRRLRAGL---DAEL*GLRQRRLLD 389
S +++ P+D P R LQ A ++ +R AG DAE+ L R LL+
Sbjct: 3 SSCAPTAVPPQDASGAATEPFRSLQIATAGAAAKKKRRPAGTPDPDAEVVSLSPRTLLE 61
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 498 RYGSFSGATQ-RYDLRIDVCVLDLMLNCEVFGS 403
R G ++G T+ RY I +C+ L+C+V GS
Sbjct: 168 RMGYYNGPTRYRYYWSIMICIERFWLDCDVIGS 200
>03_03_0174 -
15124079-15124115,15124198-15124302,15124333-15124942,
15125081-15125462
Length = 377
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 541 SSILPRDIEKLRARPLRKLQW-RDAALRSQNRRLRAGLDAEL*GLRQR 401
S+ LP+ + + RP+R W R LR + GL +L GL +R
Sbjct: 314 STGLPKKVVEFSYRPVRWQSWRRPRVLRPSKDQADQGLQQQLQGLERR 361
>01_01_0930 +
7347680-7347886,7348030-7348082,7348175-7348247,
7348493-7348594,7348697-7348798,7348888-7348959,
7349067-7349129,7349210-7349251,7349620-7349679,
7349755-7349865,7350044-7350214,7350392-7350482,
7350571-7350845
Length = 473
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -3
Query: 508 RARPLRKLQWRDAALRSQNRRLRAGLDAEL*GLRQRRLLDFRSRLTTLKTI 356
R RP +L + ++ RL DAE+ GL+ R +DF S T+ I
Sbjct: 23 RPRPQLRLSTSTSCAAMKSYRLSELSDAEVGGLKARPRIDFSSIFGTVNPI 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,321,411
Number of Sequences: 37544
Number of extensions: 269276
Number of successful extensions: 956
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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