Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0224
(564 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28) 30 1.5
SB_9846| Best HMM Match : DUF605 (HMM E-Value=0.046) 29 2.6
SB_31362| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_20117| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_42834| Best HMM Match : C2 (HMM E-Value=3.7e-20) 27 8.0
>SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28)
Length = 815
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +2
Query: 116 PTRCSSLERPSVPVKLINANSPQQD---FKHNKPSSLPPHLTKEMPQ 247
PT S+ ERPS V + N PQ + K N P S PP + + Q
Sbjct: 597 PTGLSNEERPSPIVLTMGRNGPQTNAVAVKKNDPKSSPPTSPRSITQ 643
>SB_9846| Best HMM Match : DUF605 (HMM E-Value=0.046)
Length = 811
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 110 PLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLP 220
P P SS +P+ P +NSP + K N PSS P
Sbjct: 623 PKPNNPSSNPKPNNPSSNPKSNSPASNPKSNNPSSNP 659
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 101 ARPPLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLP 220
A P P SS +P+ P N+P + K N PSS P
Sbjct: 551 ASNPKPNNPSSNPKPNNPASNPKPNNPSSNPKSNNPSSNP 590
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 110 PLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLP 220
P P SS +P+ P N+P + K N PSS P
Sbjct: 401 PKPNNPSSNPKPNNPASNPKPNNPSSNPKPNNPSSNP 437
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 101 ARPPLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLP 220
A P P SS +P+ P N+P + K N PSS P
Sbjct: 362 ASNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPSSNP 401
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 101 ARPPLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLP 220
A P P SS +P+ P N+P + K N PSS P
Sbjct: 416 ASNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPSSNP 455
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 110 PLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLP 220
P P SS +P+ P N+P + K N PSS P
Sbjct: 455 PKPNNPSSNPKPNNPASNPKPNNPASNPKPNNPSSNP 491
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 110 PLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLP 220
P P SS +P+ P N+P + K N PSS P
Sbjct: 677 PKPNNPSSNPKPNNPASNPKPNNPASNPKPNNPSSNP 713
>SB_31362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 110 PLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLP 220
P P SS +P+ P N+P + K N PSS P
Sbjct: 17 PKPNNPSSNPKPNNPASNPKPNNPSSNPKPNNPSSNP 53
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 110 PLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLP 220
P P SS +P+ P +N+P + K N PSS P
Sbjct: 188 PKPNNPSSNPKPNNPSSNPKSNNPSSNPKPNNPSSNP 224
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 101 ARPPLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLP 220
A P P SS +P+ P N+P + K N PSS P
Sbjct: 113 ASNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPSSNP 152
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 110 PLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLP 220
P P SS +P+ P N+P + K N PSS P
Sbjct: 179 PKPNNPSSNPKPNNPSSNPKPNNPSSNPKSNNPSSNP 215
>SB_20117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 110 PLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLP 220
P P SS +P+ P N+P + K N PSS P
Sbjct: 80 PKPNNPSSNPKPNNPASNPKPNNPSSNPKPNNPSSNP 116
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 101 ARPPLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLP 220
A P P SS +P+ P N+P + K N PSS P
Sbjct: 50 ASNPKPNNPSSNPKPNNPSSNPKPNNPSSNPKPNNPSSNP 89
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 110 PLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLP 220
P P SS +P+ P N+P + K N PSS P
Sbjct: 116 PKPNNPSSNPKPNNPASNPKPNNPASNPKPNNPSSNP 152
>SB_42834| Best HMM Match : C2 (HMM E-Value=3.7e-20)
Length = 808
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +2
Query: 146 SVPVKLINANSPQQD--FKHNKPSSLPPH-LTKEMPQ 247
S + LINANSPQ D K K +P + +T++ PQ
Sbjct: 366 STEIALINANSPQGDGFLKKRKHRHIPSNGVTRQGPQ 402
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,046,221
Number of Sequences: 59808
Number of extensions: 250943
Number of successful extensions: 928
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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