Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0224
(564 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U66616-1|AAC50694.1| 1213|Homo sapiens SWI/SNF complex 170 KDa s... 33 0.69
Z97652-2|CAM26431.1| 1269|Homo sapiens Crm, cramped-like (Drosop... 33 0.92
AL031708-1|CAM26357.1| 1269|Homo sapiens Crm, cramped-like (Dros... 33 0.92
AL031009-1|CAM26477.1| 1269|Homo sapiens Crm, cramped-like (Dros... 33 0.92
AE006639-2|AAK61288.1| 1587|Homo sapiens unknown protein. 33 0.92
AB037847-1|BAA92664.2| 1066|Homo sapiens KIAA1426 protein protein. 33 0.92
Z29083-1|CAA82324.1| 420|Homo sapiens 5T4 oncofoetal antigen pr... 31 2.8
BC037161-1|AAH37161.1| 420|Homo sapiens trophoblast glycoprotei... 31 2.8
AL121977-2|CAI21546.1| 420|Homo sapiens trophoblast glycoprotei... 31 2.8
AJ012159-1|CAA09930.1| 420|Homo sapiens 5T4 oncofetal trophobla... 31 2.8
AK125566-1|BAC86205.1| 398|Homo sapiens protein ( Homo sapiens ... 31 3.7
AK027184-1|BAB15686.1| 412|Homo sapiens protein ( Homo sapiens ... 30 4.9
BC070112-1|AAH70112.1| 398|Homo sapiens FAM53A protein protein. 30 6.5
AB006755-1|BAA25194.1| 1069|Homo sapiens PCDH7 (BH-Pcdh)a protein. 29 8.5
>U66616-1|AAC50694.1| 1213|Homo sapiens SWI/SNF complex 170 KDa
subunit protein.
Length = 1213
Score = 33.1 bits (72), Expect = 0.69
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Frame = +2
Query: 35 PRPALSVHTFSSDAEQ------REGGIYARPPLPTRCSSLERPSVPVKLINANSPQQDFK 196
P PA S+ F S A+ + PP P R +L P++PV + N P
Sbjct: 1090 PPPAPSIIPFGSLADSISINLPAPPNLMGSPPSPVRPGTLPPPNLPVSMANPLHPNLPAT 1149
Query: 197 HNKPSSLP 220
PSSLP
Sbjct: 1150 TTMPSSLP 1157
>Z97652-2|CAM26431.1| 1269|Homo sapiens Crm, cramped-like (Drosophila)
protein.
Length = 1269
Score = 32.7 bits (71), Expect = 0.92
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +2
Query: 26 RNHPRPALSVHTFSSDAEQREGGIYARP---PLPTRCSSLERPSVPVKL-----INANSP 181
RN PRP L S+ + +GG++A P P +R L PS +L +N+ S
Sbjct: 807 RNPPRPLLVPGPSSTGSNDSDGGLFAVPTTLPPNSRHGKLFSPSKEAELTFRQHLNSISM 866
Query: 182 QQDFKHNKPSSL-PPHLTKEM 241
Q DF KP L HL K +
Sbjct: 867 QSDFFLPKPRKLRNRHLRKPL 887
>AL031708-1|CAM26357.1| 1269|Homo sapiens Crm, cramped-like
(Drosophila) protein.
Length = 1269
Score = 32.7 bits (71), Expect = 0.92
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +2
Query: 26 RNHPRPALSVHTFSSDAEQREGGIYARP---PLPTRCSSLERPSVPVKL-----INANSP 181
RN PRP L S+ + +GG++A P P +R L PS +L +N+ S
Sbjct: 807 RNPPRPLLVPGPSSTGSNDSDGGLFAVPTTLPPNSRHGKLFSPSKEAELTFRQHLNSISM 866
Query: 182 QQDFKHNKPSSL-PPHLTKEM 241
Q DF KP L HL K +
Sbjct: 867 QSDFFLPKPRKLRNRHLRKPL 887
>AL031009-1|CAM26477.1| 1269|Homo sapiens Crm, cramped-like
(Drosophila) protein.
Length = 1269
Score = 32.7 bits (71), Expect = 0.92
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +2
Query: 26 RNHPRPALSVHTFSSDAEQREGGIYARP---PLPTRCSSLERPSVPVKL-----INANSP 181
RN PRP L S+ + +GG++A P P +R L PS +L +N+ S
Sbjct: 807 RNPPRPLLVPGPSSTGSNDSDGGLFAVPTTLPPNSRHGKLFSPSKEAELTFRQHLNSISM 866
Query: 182 QQDFKHNKPSSL-PPHLTKEM 241
Q DF KP L HL K +
Sbjct: 867 QSDFFLPKPRKLRNRHLRKPL 887
>AE006639-2|AAK61288.1| 1587|Homo sapiens unknown protein.
Length = 1587
Score = 32.7 bits (71), Expect = 0.92
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +2
Query: 26 RNHPRPALSVHTFSSDAEQREGGIYARP---PLPTRCSSLERPSVPVKL-----INANSP 181
RN PRP L S+ + +GG++A P P +R L PS +L +N+ S
Sbjct: 1125 RNPPRPLLVPGPSSTGSNDSDGGLFAVPTTLPPNSRHGKLFSPSKEAELTFRQHLNSISM 1184
Query: 182 QQDFKHNKPSSL-PPHLTKEM 241
Q DF KP L HL K +
Sbjct: 1185 QSDFFLPKPRKLRNRHLRKPL 1205
>AB037847-1|BAA92664.2| 1066|Homo sapiens KIAA1426 protein protein.
Length = 1066
Score = 32.7 bits (71), Expect = 0.92
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +2
Query: 26 RNHPRPALSVHTFSSDAEQREGGIYARP---PLPTRCSSLERPSVPVKL-----INANSP 181
RN PRP L S+ + +GG++A P P +R L PS +L +N+ S
Sbjct: 604 RNPPRPLLVPGPSSTGSNDSDGGLFAVPTTLPPNSRHGKLFSPSKEAELTFRQHLNSISM 663
Query: 182 QQDFKHNKPSSL-PPHLTKEM 241
Q DF KP L HL K +
Sbjct: 664 QSDFFLPKPRKLRNRHLRKPL 684
>Z29083-1|CAA82324.1| 420|Homo sapiens 5T4 oncofoetal antigen
protein.
Length = 420
Score = 31.1 bits (67), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 41 PALSVHTFSSDAEQREGGIYARPPLPTRCSSL---ERPSVPVKLINAN 175
P S +FSS A + A+PPLP +C +L + VK +N N
Sbjct: 34 PTSSASSFSSSAPFLASAVSAQPPLPDQCPALCECSEAARTVKCVNRN 81
>BC037161-1|AAH37161.1| 420|Homo sapiens trophoblast glycoprotein
protein.
Length = 420
Score = 31.1 bits (67), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 41 PALSVHTFSSDAEQREGGIYARPPLPTRCSSL---ERPSVPVKLINAN 175
P S +FSS A + A+PPLP +C +L + VK +N N
Sbjct: 34 PTSSASSFSSSAPFLASAVSAQPPLPDQCPALCECSEAARTVKCVNRN 81
>AL121977-2|CAI21546.1| 420|Homo sapiens trophoblast glycoprotein
protein.
Length = 420
Score = 31.1 bits (67), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 41 PALSVHTFSSDAEQREGGIYARPPLPTRCSSL---ERPSVPVKLINAN 175
P S +FSS A + A+PPLP +C +L + VK +N N
Sbjct: 34 PTSSASSFSSSAPFLASAVSAQPPLPDQCPALCECSEAARTVKCVNRN 81
>AJ012159-1|CAA09930.1| 420|Homo sapiens 5T4 oncofetal trophoblast
glycoprotein protein.
Length = 420
Score = 31.1 bits (67), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 41 PALSVHTFSSDAEQREGGIYARPPLPTRCSSL---ERPSVPVKLINAN 175
P S +FSS A + A+PPLP +C +L + VK +N N
Sbjct: 34 PTSSASSFSSSAPFLASAVSAQPPLPDQCPALCECSEAARTVKCVNRN 81
>AK125566-1|BAC86205.1| 398|Homo sapiens protein ( Homo sapiens
cDNA FLJ43578 fis, clone SKNMC1000124, weakly similar
to Homo sapiens nuclear protein (STSG4523) mRNA. ).
Length = 398
Score = 30.7 bits (66), Expect = 3.7
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +2
Query: 2 HTISAAYERNHPRPALSVHTFSSDAEQREGGIYARPPLPTRCSSLERPSVPVKLINANSP 181
HT+ ++ PRP + + S+ G PP C SL S P +L+ SP
Sbjct: 80 HTMGLQWQPQSPRPGVGLGAASTVDPSESTGSSTAPPTKRHCRSL---SEPEELVRCRSP 136
>AK027184-1|BAB15686.1| 412|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23531 fis, clone LNG06065. ).
Length = 412
Score = 30.3 bits (65), Expect = 4.9
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +2
Query: 29 NHPRPALSVHTFSSDAEQREGGIYARPPLPTRCSSLERPSVPVKLINANSPQQDFKHNKP 208
+HP P L + Q + + + P TR RPS P +L Q ++P
Sbjct: 117 SHPSPKLQSQSQPQSNVQGQSPVRVQSPSQTRI----RPSTPSQLSPGQQSQVQTTTSQP 172
Query: 209 SSLPPHLTKEMP 244
+ PH + ++P
Sbjct: 173 IPIQPHTSLQIP 184
>BC070112-1|AAH70112.1| 398|Homo sapiens FAM53A protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 6.5
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +2
Query: 2 HTISAAYERNHPRPALSVHTFSSDAEQREGGIYARPPLPTRCSSLERPSVPVKLINANSP 181
HT+ ++ PRP + S+ G PP C SL S P +L+ SP
Sbjct: 80 HTMGLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRHCRSL---SEPEELVRCRSP 136
>AB006755-1|BAA25194.1| 1069|Homo sapiens PCDH7 (BH-Pcdh)a protein.
Length = 1069
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +2
Query: 20 YERNHPRPALSVHTFSSDAEQREGGIYARPPLPTRCSSLERPSVPVKLINANSPQQDFKH 199
Y+ + P P + +H S A ++ + PP T + + S+ + S Q + K+
Sbjct: 996 YKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGAGDNISIGSDHCSEYSCQTNNKY 1055
Query: 200 NKPSSLPPHLT 232
+K L P++T
Sbjct: 1056 SKQMRLHPYIT 1066
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,743,514
Number of Sequences: 237096
Number of extensions: 1198099
Number of successful extensions: 3426
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3423
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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